Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   RFN60_RS17995 Genome accession   NZ_CP133653
Coordinates   3484403..3485560 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain CP38     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3479403..3490560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS17965 (RFN60_17965) yvyF 3479656..3480075 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  RFN60_RS17970 (RFN60_17970) comFC 3480149..3480871 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  RFN60_RS17975 (RFN60_17975) comFB 3480835..3481131 (-) 297 WP_003227989.1 late competence protein ComFB -
  RFN60_RS17980 (RFN60_17980) comFA 3481191..3482582 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  RFN60_RS17985 (RFN60_17985) fakBA 3482688..3483533 (-) 846 WP_003244125.1 DegV family protein -
  RFN60_RS17990 (RFN60_17990) degU 3483631..3484320 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RFN60_RS17995 (RFN60_17995) degS 3484403..3485560 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  RFN60_RS18000 (RFN60_18000) yvyE 3485777..3486430 (+) 654 WP_003227979.1 YigZ family protein -
  RFN60_RS18005 (RFN60_18005) tagV 3486430..3487605 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  RFN60_RS18010 (RFN60_18010) tagO 3487679..3488755 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  RFN60_RS18015 (RFN60_18015) tuaH 3488900..3490093 (-) 1194 WP_072692828.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=875603 RFN60_RS17995 WP_003227983.1 3484403..3485560(-) (degS) [Bacillus subtilis strain CP38]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=875603 RFN60_RS17995 WP_003227983.1 3484403..3485560(-) (degS) [Bacillus subtilis strain CP38]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1