Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RFN60_RS17990 Genome accession   NZ_CP133653
Coordinates   3483631..3484320 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain CP38     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3478631..3489320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS17955 (RFN60_17955) flgN 3478811..3479293 (-) 483 WP_003227999.1 flagellar protein FlgN -
  RFN60_RS17960 (RFN60_17960) flgM 3479309..3479575 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  RFN60_RS17965 (RFN60_17965) yvyF 3479656..3480075 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  RFN60_RS17970 (RFN60_17970) comFC 3480149..3480871 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  RFN60_RS17975 (RFN60_17975) comFB 3480835..3481131 (-) 297 WP_003227989.1 late competence protein ComFB -
  RFN60_RS17980 (RFN60_17980) comFA 3481191..3482582 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  RFN60_RS17985 (RFN60_17985) fakBA 3482688..3483533 (-) 846 WP_003244125.1 DegV family protein -
  RFN60_RS17990 (RFN60_17990) degU 3483631..3484320 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RFN60_RS17995 (RFN60_17995) degS 3484403..3485560 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  RFN60_RS18000 (RFN60_18000) yvyE 3485777..3486430 (+) 654 WP_003227979.1 YigZ family protein -
  RFN60_RS18005 (RFN60_18005) tagV 3486430..3487605 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  RFN60_RS18010 (RFN60_18010) tagO 3487679..3488755 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=875602 RFN60_RS17990 WP_003219701.1 3483631..3484320(-) (degU) [Bacillus subtilis strain CP38]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=875602 RFN60_RS17990 WP_003219701.1 3483631..3484320(-) (degU) [Bacillus subtilis strain CP38]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1