Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RFN60_RS02165 Genome accession   NZ_CP133653
Coordinates   427362..428510 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis strain CP38     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 422362..433510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS02145 (RFN60_02145) yclH 422733..423413 (-) 681 WP_048654759.1 ABC transporter ATP-binding protein -
  RFN60_RS02150 (RFN60_02150) yclI 423429..424895 (-) 1467 WP_042977174.1 ABC transporter permease -
  RFN60_RS02155 (RFN60_02155) yclJ 425108..425791 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  RFN60_RS02160 (RFN60_02160) yclK 425778..427199 (+) 1422 WP_080348068.1 two-component system sensor histidine kinase YclK -
  RFN60_RS02165 (RFN60_02165) rapC 427362..428510 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  RFN60_RS02170 (RFN60_02170) phrC 428494..428616 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  RFN60_RS02175 (RFN60_02175) yczM 428716..428805 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  RFN60_RS02180 (RFN60_02180) yczN 428887..429000 (-) 114 WP_032678937.1 YjcZ family sporulation protein -
  RFN60_RS02185 (RFN60_02185) thrD 429153..430517 (-) 1365 WP_015715246.1 aspartate kinase -
  RFN60_RS02190 (RFN60_02190) ceuB 430902..431852 (+) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  RFN60_RS02195 (RFN60_02195) yclO 431845..432792 (+) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=875542 RFN60_RS02165 WP_014475800.1 427362..428510(+) (rapC) [Bacillus subtilis strain CP38]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=875542 RFN60_RS02165 WP_014475800.1 427362..428510(+) (rapC) [Bacillus subtilis strain CP38]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTAGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACGTTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568