Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   RFN60_RS01975 Genome accession   NZ_CP133653
Coordinates   370256..370654 (-) Length   132 a.a.
NCBI ID   WP_015715226.1    Uniprot ID   A0AA96URL7
Organism   Bacillus subtilis strain CP38     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 365256..375654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS01945 (RFN60_01945) yckA 365832..366512 (-) 681 WP_024572176.1 amino acid ABC transporter permease -
  RFN60_RS01950 (RFN60_01950) yckB 366522..367385 (-) 864 WP_029317191.1 transporter substrate-binding domain-containing protein -
  RFN60_RS01955 (RFN60_01955) - 367546..367743 (+) 198 WP_128992271.1 hypothetical protein -
  RFN60_RS01960 (RFN60_01960) yckC 367763..368218 (+) 456 WP_048654748.1 RDD family protein -
  RFN60_RS01965 (RFN60_01965) yckD 368300..368632 (+) 333 WP_015252849.1 YckD family protein -
  RFN60_RS01970 (RFN60_01970) bglC 368786..370219 (+) 1434 WP_048654749.1 6-phospho-beta-glucosidase -
  RFN60_RS01975 (RFN60_01975) nin/comJ 370256..370654 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  RFN60_RS01980 (RFN60_01980) nucA/comI 370681..371130 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  RFN60_RS01985 (RFN60_01985) tlpC 371298..373019 (-) 1722 WP_309520530.1 methyl-accepting chemotaxis protein TlpC -
  RFN60_RS01990 (RFN60_01990) hxlB 373130..373687 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  RFN60_RS01995 (RFN60_01995) hxlA 373693..374325 (-) 633 WP_032722903.1 3-hexulose-6-phosphate synthase -
  RFN60_RS02000 (RFN60_02000) hxlR 374558..374920 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.90 Da        Isoelectric Point: 4.8991

>NTDB_id=875539 RFN60_RS01975 WP_015715226.1 370256..370654(-) (nin/comJ) [Bacillus subtilis strain CP38]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=875539 RFN60_RS01975 WP_015715226.1 370256..370654(-) (nin/comJ) [Bacillus subtilis strain CP38]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985