Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   V8N34_RS05470 Genome accession   NZ_CP149804
Coordinates   1135588..1137372 (-) Length   594 a.a.
NCBI ID   WP_318825400.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1130588..1142372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS05455 (V8N34_05455) - 1133297..1133461 (-) 165 WP_024381780.1 hypothetical protein -
  V8N34_RS05460 (V8N34_05460) obgE 1133886..1135199 (-) 1314 WP_011922805.1 GTPase ObgE -
  V8N34_RS05465 (V8N34_05465) - 1135403..1135531 (-) 129 WP_002935474.1 DUF4044 domain-containing protein -
  V8N34_RS05470 (V8N34_05470) uvrC 1135588..1137372 (-) 1785 WP_318825400.1 excinuclease ABC subunit UvrC Machinery gene
  V8N34_RS05475 (V8N34_05475) - 1137612..1138355 (+) 744 WP_011922278.1 ABC transporter ATP-binding protein -
  V8N34_RS05480 (V8N34_05480) - 1138352..1139962 (+) 1611 WP_318825399.1 permease -
  V8N34_RS05485 (V8N34_05485) - 1139985..1140428 (-) 444 WP_002935466.1 VOC family protein -
  V8N34_RS05490 (V8N34_05490) ldcB 1140517..1141272 (-) 756 WP_141599782.1 LD-carboxypeptidase LdcB/DacB -
  V8N34_RS05495 (V8N34_05495) - 1141635..1141886 (-) 252 WP_002935464.1 phage holin -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68111.21 Da        Isoelectric Point: 8.9394

>NTDB_id=875497 V8N34_RS05470 WP_318825400.1 1135588..1137372(-) (uvrC) [Streptococcus suis strain YA]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVAEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLLITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGDNMPSLSDYDKMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKINTVEGPDDYASMREVLQRRYSRVLRDGLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAEKVKESLSSKDEI

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=875497 V8N34_RS05470 WP_318825400.1 1135588..1137372(-) (uvrC) [Streptococcus suis strain YA]
ATGAACGATTTGATCAAGCATAAATTGGAGTTACTACCAGATAGCCCTGGCTGTTACCTCCATAAAAACAAGTACGGTAA
GATTATCTATGTGGGCAAGGCCAAAAACCTACGCAATCGGGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCTCTAGTGGCTGAAATTGCCGATTTTGAATTTATCGTGACGGATTCCAACATCGAGGCCCTCTTGCTAGAAATCAAT
CTGATTCAGGAAAACAAGCCACGCTATAACATCATGCTCAAGGATGACAAGTCTTATCCCTTCATCAAGATTACCAAGGA
ACGTCATCCACGGCTGCTCATTACTCGGCAGATTAAGAAGGATGGTGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAACTATTGGAGCGCCTCTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTTTGGCTCATGGAGACAATATGCCCAGCCTGTCTGACTATGACAAGATGGCCAAGGAAGT
GGCCCAGTTCTTGACAGGTCATGATGATAAGATTATCAAGGAAGTGCAGGACAAGATGAAGGCAGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATACCGGGATGTCCTCCAATCCATTTCAACCCTGCGGACCAAGCAACGTGTGATGGCTCAT
GACTTGCAGAATCGAGATGTCTTTGGCTACTACGTAGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCTTTTTCCATACTATAATGATGCGGGCGAAGACTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCAGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTCATCAAGCCCCAGCGTGGCGAGAAGAAGCAACTCATCAATCTGGCAACCAAGAATGCGCGTGTCAG
TCTGGAGCAGAAGTTTAATCTTTTGGAGAAAAATCTGGAGAAGACCTACGGTGCGGTGGAGAATATCGGTCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCTTTCGATAACTCCAATATTATGGGGACTAGTCCTGTGTCGGCTATGGTTGTC
TTTGAAAATGGGGTGCCTAATAAAAAAGAATACCGCAAGTACAAGATTAATACGGTTGAGGGACCGGATGACTATGCTTC
CATGCGGGAAGTTTTGCAGCGGCGGTACAGTCGGGTGCTGCGGGACGGTTTGACACCGCCTGATTTGATTATCATTGACG
GTGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTCATCGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAGACACACGAATTGCTCTTTGGTAATCCGCTGGAAGTAGTTGAGTTGCCTCGCAATTCACAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAGGTTCACCGCTTTGCTATTGAGTTTCATCGTCAGGTTCGGTCAAAAAATT
CCTTCTCATCCAAATTGGACGGCATAGAAGGCTTGGGACCAAAACGCAAGCAGGCTTTGATGAAGCATTTCAAGTCTATT
GGCAATATCCAGTCGGCCAGTCTACAAGAAATCGCAGAAGCAGGAGTGCCGTATAAAGTAGCGGAAAAGGTCAAGGAAAG
CCTTTCTTCAAAGGATGAGATTTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(538-588)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

UvrB/uvrC motif (UVR)

(196-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.728

99.832

0.766
  uvrC Streptococcus pneumoniae R6

76.391

99.832

0.763
  uvrC Streptococcus pneumoniae D39

76.391

99.832

0.763