Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LTWDN19_RS10195 | Genome accession | NZ_AP024685 |
| Coordinates | 1956834..1957250 (+) | Length | 138 a.a. |
| NCBI ID | WP_221276505.1 | Uniprot ID | - |
| Organism | Latilactobacillus curvatus strain WDN19 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1946527..1966380 | 1956834..1957250 | within | 0 |
Gene organization within MGE regions
Location: 1946527..1966380
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LTWDN19_RS10100 (LTWDN19_20170) | - | 1946527..1947777 (-) | 1251 | WP_375792402.1 | tyrosine-type recombinase/integrase | - |
| LTWDN19_RS10105 (LTWDN19_20180) | - | 1947833..1948531 (-) | 699 | WP_221276488.1 | hypothetical protein | - |
| LTWDN19_RS10110 (LTWDN19_20190) | - | 1948528..1948905 (-) | 378 | WP_221276489.1 | hypothetical protein | - |
| LTWDN19_RS10115 (LTWDN19_20200) | - | 1948910..1949836 (-) | 927 | WP_221276490.1 | ParA family protein | - |
| LTWDN19_RS10120 (LTWDN19_20210) | - | 1949932..1950648 (-) | 717 | WP_221276491.1 | hypothetical protein | - |
| LTWDN19_RS10125 (LTWDN19_20220) | - | 1950669..1951061 (-) | 393 | WP_221276492.1 | DUF4064 domain-containing protein | - |
| LTWDN19_RS10130 (LTWDN19_20230) | - | 1951167..1952012 (-) | 846 | WP_221276493.1 | hypothetical protein | - |
| LTWDN19_RS10135 (LTWDN19_20240) | - | 1952073..1952474 (-) | 402 | WP_221276494.1 | ImmA/IrrE family metallo-endopeptidase | - |
| LTWDN19_RS10140 (LTWDN19_20250) | - | 1952474..1952809 (-) | 336 | WP_069468036.1 | helix-turn-helix domain-containing protein | - |
| LTWDN19_RS10145 (LTWDN19_20260) | - | 1952958..1953185 (+) | 228 | WP_221276495.1 | helix-turn-helix transcriptional regulator | - |
| LTWDN19_RS10150 (LTWDN19_20270) | - | 1953208..1953453 (+) | 246 | WP_221276496.1 | hypothetical protein | - |
| LTWDN19_RS10155 (LTWDN19_20280) | - | 1953431..1953682 (-) | 252 | WP_221276497.1 | hypothetical protein | - |
| LTWDN19_RS10160 (LTWDN19_20290) | - | 1953768..1953932 (+) | 165 | WP_221276498.1 | hypothetical protein | - |
| LTWDN19_RS10165 (LTWDN19_20300) | - | 1954013..1954528 (+) | 516 | WP_221276499.1 | hypothetical protein | - |
| LTWDN19_RS10170 (LTWDN19_20310) | - | 1954531..1954779 (+) | 249 | WP_221276500.1 | LacI family DNA-binding transcriptional regulator | - |
| LTWDN19_RS10175 (LTWDN19_20320) | - | 1954776..1954994 (+) | 219 | WP_221276501.1 | hypothetical protein | - |
| LTWDN19_RS10180 (LTWDN19_20330) | - | 1955122..1955304 (+) | 183 | WP_221276502.1 | hypothetical protein | - |
| LTWDN19_RS10185 (LTWDN19_20340) | bet | 1955304..1956071 (+) | 768 | WP_221276503.1 | phage recombination protein Bet | - |
| LTWDN19_RS10190 (LTWDN19_20350) | - | 1955953..1956822 (+) | 870 | WP_221276504.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| LTWDN19_RS10195 (LTWDN19_20360) | ssb | 1956834..1957250 (+) | 417 | WP_221276505.1 | single-stranded DNA-binding protein | Machinery gene |
| LTWDN19_RS10200 (LTWDN19_20370) | - | 1957261..1958169 (+) | 909 | WP_221276506.1 | DnaD domain-containing protein | - |
| LTWDN19_RS10205 (LTWDN19_20380) | - | 1958159..1958368 (+) | 210 | WP_221276507.1 | hypothetical protein | - |
| LTWDN19_RS10210 (LTWDN19_20390) | - | 1958369..1958860 (+) | 492 | WP_221276508.1 | hypothetical protein | - |
| LTWDN19_RS10215 (LTWDN19_20400) | - | 1958871..1959077 (+) | 207 | WP_081303843.1 | DUF6877 family protein | - |
| LTWDN19_RS10220 (LTWDN19_20410) | - | 1959077..1959241 (+) | 165 | WP_155275678.1 | hypothetical protein | - |
| LTWDN19_RS10225 (LTWDN19_20420) | - | 1959256..1959432 (+) | 177 | WP_221276509.1 | hypothetical protein | - |
| LTWDN19_RS10230 (LTWDN19_20430) | - | 1959553..1960020 (+) | 468 | WP_221276510.1 | DUF1064 domain-containing protein | - |
| LTWDN19_RS10235 (LTWDN19_20440) | - | 1960017..1960220 (+) | 204 | WP_221276511.1 | hypothetical protein | - |
| LTWDN19_RS10240 (LTWDN19_20450) | - | 1960240..1960422 (+) | 183 | WP_065825504.1 | hypothetical protein | - |
| LTWDN19_RS10245 (LTWDN19_20460) | - | 1960422..1960658 (+) | 237 | WP_039098607.1 | helix-turn-helix domain-containing protein | - |
| LTWDN19_RS10250 (LTWDN19_20470) | - | 1960772..1961197 (+) | 426 | WP_065825505.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| LTWDN19_RS10255 (LTWDN19_20480) | - | 1961689..1962705 (+) | 1017 | WP_221276512.1 | DUF6731 family protein | - |
| LTWDN19_RS10260 (LTWDN19_20490) | - | 1962731..1963213 (+) | 483 | WP_221276513.1 | hypothetical protein | - |
| LTWDN19_RS10795 (LTWDN19_20500) | - | 1963312..1963440 (+) | 129 | WP_260332653.1 | hypothetical protein | - |
| LTWDN19_RS10265 (LTWDN19_20520) | - | 1963718..1964029 (+) | 312 | WP_076632024.1 | bacteriocin immunity protein | - |
| LTWDN19_RS10270 (LTWDN19_20530) | - | 1964098..1964268 (+) | 171 | WP_164905632.1 | hypothetical protein | - |
| LTWDN19_RS10275 (LTWDN19_20540) | - | 1964268..1965113 (+) | 846 | WP_221276514.1 | terminase small subunit | - |
| LTWDN19_RS10280 (LTWDN19_20550) | - | 1965106..1966380 (+) | 1275 | WP_221276515.1 | PBSX family phage terminase large subunit | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 15194.69 Da Isoelectric Point: 6.4464
>NTDB_id=87545 LTWDN19_RS10195 WP_221276505.1 1956834..1957250(+) (ssb) [Latilactobacillus curvatus strain WDN19]
MNSVNLIGNLTADIKLETSSNQTHYTRFSLAVRRDANHTDFINCVAFGKTAEMLSNQIKGSKIGVSGSWQTGSYQNQQGQ
KVYTNDCSVYRVYFLSPLNKDADTRNTAPSSAATTNNYVDPFANNGQPIDISDNDLPF
MNSVNLIGNLTADIKLETSSNQTHYTRFSLAVRRDANHTDFINCVAFGKTAEMLSNQIKGSKIGVSGSWQTGSYQNQQGQ
KVYTNDCSVYRVYFLSPLNKDADTRNTAPSSAATTNNYVDPFANNGQPIDISDNDLPF
Nucleotide
Download Length: 417 bp
>NTDB_id=87545 LTWDN19_RS10195 WP_221276505.1 1956834..1957250(+) (ssb) [Latilactobacillus curvatus strain WDN19]
ATGAATTCAGTAAACTTAATCGGCAACTTAACAGCCGATATTAAATTGGAGACAAGCAGCAATCAAACACACTATACAAG
ATTCTCTTTAGCGGTAAGACGTGATGCTAATCACACGGACTTCATTAACTGTGTTGCGTTTGGAAAGACAGCAGAAATGC
TAAGTAATCAGATAAAAGGTTCAAAGATTGGTGTTAGTGGCAGCTGGCAAACAGGCAGCTATCAAAACCAACAAGGACAA
AAGGTTTATACCAATGATTGTAGCGTTTATCGGGTTTATTTCTTATCGCCGCTAAATAAAGATGCTGACACACGCAATAC
AGCGCCAAGTTCAGCAGCAACAACTAATAACTATGTTGATCCATTCGCAAATAACGGACAACCAATCGATATTTCAGATA
ACGATTTACCGTTCTAG
ATGAATTCAGTAAACTTAATCGGCAACTTAACAGCCGATATTAAATTGGAGACAAGCAGCAATCAAACACACTATACAAG
ATTCTCTTTAGCGGTAAGACGTGATGCTAATCACACGGACTTCATTAACTGTGTTGCGTTTGGAAAGACAGCAGAAATGC
TAAGTAATCAGATAAAAGGTTCAAAGATTGGTGTTAGTGGCAGCTGGCAAACAGGCAGCTATCAAAACCAACAAGGACAA
AAGGTTTATACCAATGATTGTAGCGTTTATCGGGTTTATTTCTTATCGCCGCTAAATAAAGATGCTGACACACGCAATAC
AGCGCCAAGTTCAGCAGCAACAACTAATAACTATGTTGATCCATTCGCAAATAACGGACAACCAATCGATATTTCAGATA
ACGATTTACCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
39.645 |
100 |
0.486 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.257 |
100 |
0.449 |