Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WJM95_RS31925 Genome accession   NZ_CP149798
Coordinates   7348706..7349401 (-) Length   231 a.a.
NCBI ID   WP_339134055.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7343706..7354401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS31915 (WJM95_31915) - 7344482..7345663 (-) 1182 WP_339134051.1 MFS transporter -
  WJM95_RS31920 (WJM95_31920) - 7346110..7348545 (-) 2436 WP_339134053.1 SpoIIE family protein phosphatase -
  WJM95_RS31925 (WJM95_31925) vraR 7348706..7349401 (-) 696 WP_339134055.1 response regulator transcription factor Regulator
  WJM95_RS31930 (WJM95_31930) - 7349406..7350635 (-) 1230 WP_339135984.1 histidine kinase -
  WJM95_RS31935 (WJM95_31935) - 7350664..7351542 (-) 879 WP_339134057.1 CPBP family intramembrane glutamic endopeptidase -
  WJM95_RS31940 (WJM95_31940) - 7351709..7352602 (-) 894 WP_339134059.1 phosphotransferase -
  WJM95_RS31945 (WJM95_31945) - 7352616..7353032 (-) 417 WP_339134061.1 hypothetical protein -
  WJM95_RS31950 (WJM95_31950) - 7353197..7353754 (+) 558 WP_339134063.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24898.83 Da        Isoelectric Point: 7.4219

>NTDB_id=875353 WJM95_RS31925 WP_339134055.1 7348706..7349401(-) (vraR) [Streptomyces sp. f51]
MSHAPQPIRVLVCDDQALVRTGYVTIFSAQPDIEVVGEAENGHAAVEAARRLRPDVVVMDIRMPLLDGIQATRQLAGPDA
GVPPKVLVVTTFNVDAYVYDALRAGASGFLLKDAPPAELVNGIRTVARGEALLAPAVTRHLIGHFAEHLRPSETSRPAAR
EELARALTPRELDVLRRIAEGLSNKEIAAALFITPETVKTYVSRILAKLGLRDRVQAVVLAYRVGLIPAAD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=875353 WJM95_RS31925 WP_339134055.1 7348706..7349401(-) (vraR) [Streptomyces sp. f51]
GTGAGCCATGCGCCGCAGCCCATCCGTGTACTCGTCTGCGACGACCAGGCACTGGTGCGGACCGGCTACGTCACCATCTT
CTCCGCGCAGCCCGACATCGAGGTCGTCGGGGAGGCCGAGAACGGGCACGCGGCGGTGGAAGCCGCACGGCGGCTGCGGC
CCGACGTGGTCGTGATGGACATCCGGATGCCCCTGCTGGACGGCATCCAGGCGACCCGGCAGCTGGCCGGTCCCGATGCC
GGGGTCCCTCCGAAGGTGCTGGTCGTCACCACGTTCAACGTCGACGCCTACGTCTACGACGCGTTGCGGGCCGGAGCCAG
CGGCTTCCTGCTCAAGGACGCGCCTCCCGCGGAGCTGGTGAACGGGATCCGGACGGTCGCCCGGGGCGAGGCCCTGCTCG
CACCCGCCGTCACCCGCCATCTCATCGGTCATTTCGCCGAACATCTGCGGCCGTCCGAGACCTCACGGCCGGCCGCCAGG
GAAGAACTCGCACGGGCGCTGACCCCCCGCGAGCTGGACGTGCTCCGGCGGATCGCCGAGGGGCTGTCGAACAAGGAGAT
CGCCGCGGCGCTGTTCATCACGCCCGAGACGGTCAAGACCTACGTTTCCCGGATCCTGGCCAAGCTGGGCCTGCGCGACC
GCGTCCAGGCAGTCGTCCTCGCGTACCGGGTCGGGCTGATCCCGGCGGCGGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(166-221)

Response regulator receiver domain (Response_reg)

(10-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.359

96.537

0.39
  degU Bacillus subtilis subsp. subtilis str. 168

36.842

98.701

0.364