Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WJM95_RS17150 Genome accession   NZ_CP149798
Coordinates   3915375..3916055 (+) Length   226 a.a.
NCBI ID   WP_339130598.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3910375..3921055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS17130 (WJM95_17130) - 3910521..3911495 (+) 975 WP_339130595.1 alpha/beta hydrolase -
  WJM95_RS17135 (WJM95_17135) - 3911647..3912708 (+) 1062 WP_339130596.1 alpha/beta hydrolase -
  WJM95_RS17140 (WJM95_17140) - 3912803..3913942 (+) 1140 WP_339135630.1 acyltransferase -
  WJM95_RS17145 (WJM95_17145) - 3914017..3915378 (+) 1362 WP_339130597.1 histidine kinase -
  WJM95_RS17150 (WJM95_17150) vraR 3915375..3916055 (+) 681 WP_339130598.1 response regulator transcription factor Regulator
  WJM95_RS17155 (WJM95_17155) - 3916124..3917344 (+) 1221 WP_339130599.1 cytochrome P450 -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24407.11 Da        Isoelectric Point: 4.7677

>NTDB_id=875315 WJM95_RS17150 WP_339130598.1 3915375..3916055(+) (vraR) [Streptomyces sp. f51]
MTGGTSRAIRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGREAVDRVRELQPDVVLMDIRMPEMNGIDATREIVAAD
GAAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVSAGEALLAPSVTKRLITEFSKLAEEPRMSAAHGAY
GDLTDRETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=875315 WJM95_RS17150 WP_339130598.1 3915375..3916055(+) (vraR) [Streptomyces sp. f51]
ATGACGGGCGGCACGAGTCGGGCGATCCGTGTGCTGATCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCCGTCCT
GCTCGGCGCCATGCCCGACATCGAGGTGGTCGGCGAGGCGGTCAACGGCAGGGAGGCCGTCGACCGGGTCCGCGAGCTGC
AACCGGACGTCGTCCTGATGGACATCCGCATGCCGGAGATGAACGGCATCGACGCGACCCGGGAGATCGTCGCCGCGGAC
GGAGCCGCGAAGGTGCTGGTGCTCACGACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGGGCCTCCGG
CTTCCTGCTCAAGGACGCCTCGGCCCGCCAGCTCGCCGACGGCGTGAGGGTCGTGTCGGCCGGGGAGGCGCTGCTCGCCC
CCTCGGTCACCAAGCGGCTGATCACGGAGTTCTCCAAGCTCGCGGAGGAGCCCCGGATGTCGGCGGCGCACGGGGCGTAC
GGGGATCTGACCGACCGGGAGACGGAGGTGCTGGTGCTGATCGCGCAGGGGCTGTCGAACGCGGAGATCGCCGAGCGGCT
CGTCGTCGCGGAGTCGACCATCAAGACCCACGTGAGCCGCATCCTGGTGAAGCTGGGGCTCCGGGACCGCACGCAGGCCG
CGGTCTTCGCGTACGAGGCACGGCTGGTCACTCCCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory proteins, luxR family (GerE)

(163-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.651

95.133

0.425
  degU Bacillus subtilis subsp. subtilis str. 168

41.15

100

0.412