Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LTWDN19_RS04835 Genome accession   NZ_AP024685
Coordinates   915596..917407 (+) Length   603 a.a.
NCBI ID   WP_221276757.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WDN19     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 910596..922407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTWDN19_RS04820 (LTWDN19_09530) aspS 910620..912398 (-) 1779 WP_221276755.1 aspartate--tRNA ligase -
  LTWDN19_RS04825 (LTWDN19_09540) - 912774..914012 (-) 1239 WP_080752751.1 NupC/NupG family nucleoside CNT transporter -
  LTWDN19_RS04830 (LTWDN19_09550) - 914191..915399 (-) 1209 WP_221276756.1 LCP family protein -
  LTWDN19_RS04835 (LTWDN19_09560) pepF 915596..917407 (+) 1812 WP_221276757.1 oligoendopeptidase F Regulator
  LTWDN19_RS04840 (LTWDN19_09570) - 917448..918224 (-) 777 WP_039098355.1 metal ABC transporter permease -
  LTWDN19_RS04845 (LTWDN19_09580) - 918259..918939 (-) 681 WP_004265149.1 metal ABC transporter ATP-binding protein -
  LTWDN19_RS04850 (LTWDN19_09590) - 918936..919823 (-) 888 WP_221276758.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LTWDN19_RS04855 (LTWDN19_09600) - 920097..920675 (-) 579 WP_039098314.1 hypothetical protein -
  LTWDN19_RS04860 (LTWDN19_09610) - 920781..922322 (-) 1542 WP_221276759.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67474.60 Da        Isoelectric Point: 4.6609

>NTDB_id=87530 LTWDN19_RS04835 WP_221276757.1 915596..917407(+) (pepF) [Latilactobacillus curvatus strain WDN19]
MSTQQLPTRDAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIKQILATFRQLEIIYVYASM
KNDQDTANTTYQGYQAQVDSLAAEVSAAAAFLDPAILAIPIVQLTTWLSESPALAKYSHFIQTITDSRDHILSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTFQLSDGVYSQLLQSANRSVRQAAFEALYKTYGQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVAHIFDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKIQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAAANGQP
LTAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFAAATTLANGISTKQPGALDHYLDYLKAGS
SAYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLANLN

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=87530 LTWDN19_RS04835 WP_221276757.1 915596..917407(+) (pepF) [Latilactobacillus curvatus strain WDN19]
ATGTCAACTCAACAACTCCCCACCCGCGATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCAAACAAATCTTAGCCACTTTCCGCCAACTCGAAATAATTTACGTTTATGCTAGCATG
AAAAATGATCAGGATACTGCTAACACAACTTATCAAGGCTATCAAGCCCAAGTGGACAGCTTAGCGGCCGAAGTTTCAGC
CGCCGCTGCTTTCTTAGACCCTGCGATTCTCGCAATTCCTATTGTTCAATTGACCACTTGGTTGTCAGAATCCCCTGCTT
TAGCCAAATACAGCCATTTCATTCAAACCATTACCGATAGTCGAGACCATATCTTATCTGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGTGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTTCAGCTTTCAGACGGGGTCTACAGCCAACTTTTGCAATCAGCCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATGGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCATAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCACCCAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTTAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTTTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAAGCATTGTCGATCCTAGGACCCGATTACGCCAAACAAGTTGCCCATATTTTTGATGA
CCGCTTAATCGATGTTTGTGAAAACCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAACCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACATTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAGTCTGATCCTAAGATCCAGGCCTATCTACTAAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCTGCTGCTGCCAATGGTCAGCCA
CTAACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACA
GATTGCCCTTGAATGGACTCGGATTCCACATTTCTACATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTGCTG
CAACGACTCTCGCTAACGGTATTAGCACCAAACAGCCCGGTGCTCTCGATCACTATTTAGACTACCTAAAAGCTGGGAGC
TCCGCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGT
TTTCGAAGAACGTCTGGATCAACTCGAAGCCCTACTTGCTAACCTAAATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-184)

Peptidase family M3 (Peptidase_M3)

(205-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.392

98.176

0.534

Multiple sequence alignment