Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WJM95_RS06410 Genome accession   NZ_CP149798
Coordinates   1430316..1430957 (-) Length   213 a.a.
NCBI ID   WP_339128510.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1425316..1435957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS06380 (WJM95_06380) - 1425742..1426701 (-) 960 WP_339128503.1 SPFH domain-containing protein -
  WJM95_RS06385 (WJM95_06385) - 1426832..1427266 (-) 435 WP_339128504.1 NfeD family protein -
  WJM95_RS06390 (WJM95_06390) - 1427363..1428154 (-) 792 WP_339128505.1 ABC transporter ATP-binding protein -
  WJM95_RS06395 (WJM95_06395) - 1428275..1429063 (+) 789 WP_339128506.1 hypothetical protein -
  WJM95_RS06400 (WJM95_06400) - 1429486..1429725 (-) 240 WP_339128507.1 chaplin -
  WJM95_RS06405 (WJM95_06405) - 1429925..1430170 (-) 246 WP_339128509.1 chaplin -
  WJM95_RS06410 (WJM95_06410) vraR 1430316..1430957 (-) 642 WP_339128510.1 response regulator transcription factor Regulator
  WJM95_RS06415 (WJM95_06415) - 1430950..1432116 (-) 1167 WP_339128511.1 GAF domain-containing sensor histidine kinase -
  WJM95_RS06420 (WJM95_06420) - 1432301..1432996 (+) 696 WP_339128512.1 SDR family NAD(P)-dependent oxidoreductase -
  WJM95_RS06425 (WJM95_06425) - 1432993..1434120 (+) 1128 WP_339128513.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  WJM95_RS06430 (WJM95_06430) - 1434411..1435187 (+) 777 WP_339128514.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23101.36 Da        Isoelectric Point: 5.1544

>NTDB_id=875292 WJM95_RS06410 WP_339128510.1 1430316..1430957(-) (vraR) [Streptomyces sp. f51]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGSEGVTRAEELRPDVVLMDVKMPGMDGVDALRKLRELANPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHVVLQQEVANALLSQEEVNSGQGRGVSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGIAD

Nucleotide


Download         Length: 642 bp        

>NTDB_id=875292 WJM95_RS06410 WP_339128510.1 1430316..1430957(-) (vraR) [Streptomyces sp. f51]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGACTGCGCACCTTCCTCGAAGTACA
GGACGACATCGAGGTCGTGGGGGAGGCGTCCGACGGGTCGGAGGGCGTCACCCGCGCCGAGGAGCTGAGACCCGACGTCG
TCCTCATGGACGTCAAGATGCCGGGAATGGACGGCGTGGACGCGCTGCGCAAGCTCCGCGAACTCGCCAACCCCGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTACCGGCGCTGCGCGCGGGCGCCGCCGGGTACGTGTACAA
GGACGTGGACCCCGACGCGCTGGCCGGGGCCATCCGCTCCGTCCACGCGGGGCATGTCGTCCTGCAACAGGAGGTCGCCA
ACGCCCTGTTGTCGCAGGAGGAGGTCAACTCGGGCCAGGGCAGAGGTGTCTCGCTCACCGAGCGGGAACGGGAGGTGCTC
GGCCTGATCGCGGACGGCCGGTCCAACCGGGAGATCGCCCGCGCCCTCGTCCTATCCGAGAAGACGGTGAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTCGCCGACCGCACCCAGGCCGCCCTGTGGGCCGTACGGCACGGGATCGCGGACT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.811

99.531

0.446
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.408