Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WJM95_RS03590 Genome accession   NZ_CP149798
Coordinates   801347..802009 (+) Length   220 a.a.
NCBI ID   WP_339127994.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 796347..807009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS03565 (WJM95_03565) mug 797065..797613 (+) 549 WP_339135336.1 G/U mismatch-specific DNA glycosylase -
  WJM95_RS03570 (WJM95_03570) - 797889..798344 (-) 456 WP_339127990.1 hypothetical protein -
  WJM95_RS03575 (WJM95_03575) - 798403..799128 (-) 726 WP_339127991.1 ABC transporter permease -
  WJM95_RS03580 (WJM95_03580) - 799131..800060 (-) 930 WP_339127992.1 ATP-binding cassette domain-containing protein -
  WJM95_RS03585 (WJM95_03585) - 800169..801332 (+) 1164 WP_339127993.1 histidine kinase -
  WJM95_RS03590 (WJM95_03590) vraR 801347..802009 (+) 663 WP_339127994.1 response regulator transcription factor Regulator
  WJM95_RS03595 (WJM95_03595) - 802107..803264 (+) 1158 WP_339127995.1 ROK family transcriptional regulator -
  WJM95_RS03600 (WJM95_03600) - 803523..804284 (-) 762 WP_339127996.1 GntR family transcriptional regulator -
  WJM95_RS03605 (WJM95_03605) - 804662..805315 (+) 654 WP_339127997.1 NAD(P)-binding domain-containing protein -
  WJM95_RS03610 (WJM95_03610) - 805548..806378 (+) 831 WP_339127998.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23363.02 Da        Isoelectric Point: 4.9806

>NTDB_id=875288 WJM95_RS03590 WP_339127994.1 801347..802009(+) (vraR) [Streptomyces sp. f51]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRLRPDVVAMDVRMPLMDGIEATRAILRTVADPPKI
IVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAADHGDGGASPAARAVMERAALTER
EADVLRLMARGMSNAEIAARLVVGTETVKSHVSSLLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=875288 WJM95_RS03590 WP_339127994.1 801347..802009(+) (vraR) [Streptomyces sp. f51]
ATGCCGGTCACCGTTCTGCTCGTCGACGACGAACCCCTCGTACGCGCGGGGCTGCGCGCCGTTCTGGAGGCACAGCCCGA
CATCGAGGTCGTCGGTGAGGCCGCCGACGGCGCCGCCGTGATCCCGCTGGTCAGGCGGTTGCGTCCGGACGTGGTCGCCA
TGGATGTCCGGATGCCCCTGATGGACGGCATCGAGGCCACCCGGGCGATCCTGCGGACGGTCGCCGACCCGCCCAAGATC
ATTGTGGTGACGACGTTCGAGAACGACGAGTACGTCTACGAGGCGCTCCGCGCGGGAGCCGACGGATTCCTCCTGAAGCG
CGCGCGGCCGGCCGAGATCGTCCACGCGGTACGGCTCGTGGCCGAGGGCGAGTCCCTGCTGTTCCCCGCCTCCGTACGGC
AGTTGGCGGCCGACCACGGGGACGGCGGGGCCAGTCCGGCGGCCCGCGCGGTCATGGAGCGGGCCGCGCTGACCGAGCGC
GAGGCGGACGTGCTGCGGCTGATGGCCCGGGGGATGTCCAACGCCGAGATCGCCGCGCGGCTGGTCGTCGGCACCGAGAC
GGTCAAGTCGCACGTCAGCTCCCTACTGGCGAAGCTGGGGGCCCGGGACCGTACACAGGCGGTCATCGCGGCCTACGAGT
CGGGGTTCGTCGCACCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.625

100

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

35.841

100

0.368