Detailed information NTG0875282

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: RCV51_RS01015
• Genome accession: NZ_CP133611
• Coordinates: 206608..207837 (-)
• Length: 409 a.a.
• NCBI ID: WP_013177270.1
• Uniprot ID: D7CU00
• Organism: Truepera radiovictrix strain CIP 108686
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 201608..212837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCV51_RS01005 (RCV51_01005)	-	202064..203662 (-)	1599	WP_013177272.1	LysM peptidoglycan-binding domain-containing protein	-
RCV51_RS01010 (RCV51_01010)	-	203882..206167 (+)	2286	WP_013177271.1	diguanylate cyclase domain-containing protein	-
RCV51_RS01015 (RCV51_01015)	pilC	206608..207837 (-)	1230	WP_013177270.1	type II secretion system F family protein	Machinery gene
RCV51_RS01020 (RCV51_01020)	-	207914..208519 (-)	606	WP_013177269.1	hypothetical protein	-
RCV51_RS01025 (RCV51_01025)	nth	208570..209214 (+)	645	WP_013177268.1	endonuclease III	-
RCV51_RS01030 (RCV51_01030)	-	209295..210314 (+)	1020	WP_013177267.1	YpdA family putative bacillithiol disulfide reductase	-
RCV51_RS01035 (RCV51_01035)	-	210364..210897 (-)	534	WP_013177266.1	GNAT family N-acetyltransferase	-
RCV51_RS01040 (RCV51_01040)	-	211015..212076 (+)	1062	WP_013177265.1	M42 family metallopeptidase	-
RCV51_RS01045 (RCV51_01045)	-	212094..212567 (-)	474	WP_013177264.1	tRNA (cytidine(34)-2'-O)-methyltransferase	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 43921.77 Da
• Isoelectric Point: 9.6912

>NTDB_id=875282 RCV51_RS01015 WP_013177270.1 206608..207837(-) (pilC) [Truepera radiovictrix strain CIP 108686]
MPLYAYKARDRSGRLVEAVMEAPTQRDVALALREKDLLPTEIAPPKTGLHADVKLPAWLSVGGKPNLRDVTVFSRQFATV
INAGLPVVQSLAILQRQAEKDALKEALKRIREEVETGTPLSEALAKHPKLFGRLYVYLVRAGEASGNLDSILERIALYQE
KQAALRGKLRSALTYPTVVLLIALGVTYFLLTGIVPQFAGILTQLGGELPLMTRVLIAISDFLRGQWWLLLLLAVGGVVG
LGAFYRTARGRRAIDGALLKAPVLGKLVQKTAIASFSSTFGLLLKSGVNILEAIDITKGTAGNAIVEDVLEEAKGAVQRG
EQMSLTLLARPKVFPPLVASMVAIGEETGAVDAMMEKVASFYEREVNEAVESLTAALEPLLIVFLGGVVGFIVAGMFLPM
FAIIGQLGG

Nucleotide

• Length: 1230 bp

>NTDB_id=875282 RCV51_RS01015 WP_013177270.1 206608..207837(-) (pilC) [Truepera radiovictrix strain CIP 108686]
ATGCCGCTCTACGCTTACAAGGCCAGGGACCGCTCCGGTCGCCTCGTGGAGGCGGTGATGGAGGCCCCCACGCAGCGCGA
CGTCGCGCTGGCGCTACGCGAAAAGGACCTCCTGCCCACCGAGATCGCCCCCCCGAAGACGGGGTTGCACGCCGACGTCA
AGCTGCCGGCGTGGCTGAGCGTCGGGGGAAAACCCAACCTGCGCGACGTCACGGTGTTTAGCCGCCAGTTCGCGACGGTG
ATCAACGCGGGGTTGCCGGTCGTGCAGTCGCTGGCGATCTTGCAGCGCCAAGCCGAAAAGGACGCCCTCAAAGAGGCGCT
CAAAAGGATCCGCGAGGAGGTCGAGACCGGCACGCCCCTCTCGGAGGCGCTCGCAAAGCACCCCAAGCTCTTCGGTCGGC
TCTACGTCTACCTCGTACGGGCGGGGGAGGCGTCGGGCAACCTAGACAGCATCCTAGAGCGCATCGCGCTCTACCAGGAG
AAGCAGGCGGCGCTGCGCGGCAAGTTGCGGAGCGCTCTAACCTACCCCACCGTGGTGCTCCTTATCGCCCTCGGCGTCAC
CTACTTTCTGCTGACGGGGATCGTGCCGCAGTTCGCGGGGATCTTGACGCAGCTCGGCGGTGAGCTGCCCCTCATGACGC
GCGTGCTGATCGCCATCAGCGACTTTTTGCGGGGGCAGTGGTGGCTGCTGCTCCTGCTCGCTGTCGGCGGCGTGGTGGGG
TTGGGGGCGTTTTACCGTACCGCTCGGGGGCGCCGCGCGATCGACGGCGCGCTCCTCAAAGCGCCGGTGCTGGGCAAGCT
GGTGCAAAAAACCGCCATCGCGAGCTTTTCGAGCACCTTTGGGCTCCTTCTCAAGAGCGGCGTCAACATCCTCGAGGCGA
TCGACATCACCAAGGGCACAGCCGGCAACGCGATCGTCGAGGACGTGCTCGAGGAGGCCAAAGGGGCGGTGCAGCGCGGC
GAGCAGATGAGCCTGACGCTGCTCGCGCGGCCCAAGGTCTTTCCGCCTCTGGTCGCTTCGATGGTCGCCATCGGCGAGGA
GACGGGCGCGGTCGACGCGATGATGGAAAAAGTCGCGAGCTTTTACGAGCGCGAGGTCAACGAGGCCGTCGAGAGCCTCA
CGGCGGCGCTGGAGCCCCTGCTGATCGTCTTCTTGGGCGGCGTCGTCGGGTTTATCGTGGCGGGGATGTTCCTGCCGATG
TTCGCGATTATCGGGCAGCTGGGTGGGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

• Type II secretion system (T2SS), protein F (T2SSF) (276-399)

3D structure

• AlphaFold DB: D7CU00

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	59.951	99.511	0.597
pilC	Legionella pneumophila strain ERS1305867	36.7	99.267	0.364
pilC	Vibrio cholerae strain A1552	36.253	100	0.364