Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   WID27_RS21820 Genome accession   NZ_CP149796
Coordinates   5015484..5016905 (-) Length   473 a.a.
NCBI ID   WP_070204513.1    Uniprot ID   A0A1E7LIP1
Organism   Streptomyces sp. F41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5010484..5021905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WID27_RS21800 (WID27_21800) - 5011076..5011843 (-) 768 WP_339152857.1 SigE family RNA polymerase sigma factor -
  WID27_RS21805 (WID27_21805) - 5012035..5012964 (-) 930 WP_217688500.1 A/G-specific adenine glycosylase -
  WID27_RS21810 (WID27_21810) - 5013231..5014085 (+) 855 WP_208623862.1 hypothetical protein -
  WID27_RS21815 (WID27_21815) disA 5014278..5015402 (-) 1125 WP_028416141.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  WID27_RS21820 (WID27_21820) radA/sms 5015484..5016905 (-) 1422 WP_070204513.1 DNA repair protein RadA Machinery gene
  WID27_RS21825 (WID27_21825) - 5017120..5019141 (+) 2022 WP_339152858.1 hypothetical protein -
  WID27_RS21830 (WID27_21830) - 5019300..5020142 (-) 843 WP_070203426.1 hypothetical protein -
  WID27_RS21835 (WID27_21835) - 5020182..5021132 (+) 951 WP_339152859.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49893.01 Da        Isoelectric Point: 8.2598

>NTDB_id=875259 WID27_RS21820 WP_070204513.1 5015484..5016905(-) (radA/sms) [Streptomyces sp. F41]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIRAISDHLYLAAETDLSAV
LAHLDEVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVADMGDALRVLPRRSRQEAPQPRQEDNARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=875259 WID27_RS21820 WP_070204513.1 5015484..5016905(-) (radA/sms) [Streptomyces sp. F41]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGACCACCGCCAAATGGCT
CGGCCGTTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACGACCGCGGCCG
GGCGGGTCTCCACCGCCGCGCTGCCGATCGGCCAGGTCGACAGCCGTACGGCCACGGCGCGCTCGACCGGCGTCGGGGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCGGGGGCCGTCGTGCTGCTGGCCGGTGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCCAGCC
AGGTCCGGCTGCGGGCCGACCGGATCCGGGCGATCAGCGACCACCTCTACCTCGCGGCGGAGACCGATCTCTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCCTCGCTGCTCGTCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAAGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGC
TGCTCGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTCCGCCTGGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTGACCCGGCGCGACGTCGCCGTCC
CGGGCACCTGCCTCACGGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTCACGGTCGACTCCCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTCACCGAGCCCGCCGCCGACC
TCGCGGTCGCGCTGGCGCTGGCCAGCGCCGCCAGTGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGCGGCGGCTGGCCGAGGCCCACCGCCTCGGCTTCACCCACGCCCT
GGTGCCGACCGACCCGGGACGGGTTCCTTCGGGTATGAAGGTCACAGAAGTCGCCGACATGGGGGATGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGTCAGGAGGCGCCGCAGCCTCGTCAGGAAGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7LIP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

95.772

0.419
  radA Streptococcus pneumoniae Rx1

43.046

95.772

0.412
  radA Streptococcus pneumoniae D39

43.046

95.772

0.412
  radA Streptococcus pneumoniae R6

43.046

95.772

0.412
  radA Streptococcus pneumoniae TIGR4

43.046

95.772

0.412
  radA Streptococcus mitis SK321

44.522

90.698

0.404
  radA Streptococcus mitis NCTC 12261

44.289

90.698

0.402