Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AABJ89_RS13550 Genome accession   NZ_AP027570
Coordinates   2788257..2788709 (-) Length   150 a.a.
NCBI ID   WP_022645566.1    Uniprot ID   -
Organism   Escherichia coli strain LR-60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2783257..2793709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ89_RS13520 (VEE03_25930) - 2783495..2784448 (-) 954 WP_022645570.1 hypothetical protein -
  AABJ89_RS13525 - 2784868..2786045 (+) 1178 WP_152895938.1 IS3 family transposase -
  AABJ89_RS13530 (VEE03_25960) - 2786015..2786257 (-) 243 WP_022645569.1 hypothetical protein -
  AABJ89_RS13535 (VEE03_25970) - 2786259..2786456 (-) 198 WP_022645568.1 AlpA family transcriptional regulator -
  AABJ89_RS13540 (VEE03_25980) - 2786680..2787294 (+) 615 WP_016248782.1 hypothetical protein -
  AABJ89_RS13545 (VEE03_25990) - 2787281..2788210 (-) 930 WP_023908767.1 site-specific integrase -
  AABJ89_RS13550 (VEE03_26000) radC 2788257..2788709 (-) 453 WP_022645566.1 DNA repair protein RadC Machinery gene
  AABJ89_RS13555 (VEE03_26010) - 2788711..2789172 (-) 462 WP_032140166.1 hypothetical protein -
  AABJ89_RS13560 (VEE03_26020) - 2789292..2789684 (-) 393 WP_023908768.1 DUF2787 family protein -
  AABJ89_RS13565 (VEE03_26030) - 2789946..2790320 (-) 375 WP_022645563.1 helix-turn-helix transcriptional regulator -
  AABJ89_RS13570 (VEE03_26040) - 2790510..2791037 (+) 528 WP_022645562.1 hypothetical protein -
  AABJ89_RS13575 (VEE03_26050) - 2791052..2791411 (+) 360 WP_022645561.1 hypothetical protein -
  AABJ89_RS13580 (VEE03_26060) - 2791442..2791777 (+) 336 WP_072665036.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17251.98 Da        Isoelectric Point: 6.4874

>NTDB_id=87518 AABJ89_RS13550 WP_022645566.1 2788257..2788709(-) (radC) [Escherichia coli strain LR-60]
MTMFTQRETRILDQARDIISRYYQRGVQLCSPDDVRRCVMVELAPLEHEEFGIILLDNQNQLLHREILFRGTLNSVSVHP
REVIKRVLKNNAAAVILVHNHPSGEPEPSRCDIQLTKKLQELLEMLDVRLLDHFIVAGTETVSMAERGLV

Nucleotide


Download         Length: 453 bp        

>NTDB_id=87518 AABJ89_RS13550 WP_022645566.1 2788257..2788709(-) (radC) [Escherichia coli strain LR-60]
ATGACCATGTTTACCCAGCGTGAAACCCGTATCCTTGACCAGGCGCGTGACATTATCAGCCGGTACTACCAGCGTGGCGT
TCAGCTCTGTTCCCCTGATGATGTTCGGCGGTGCGTAATGGTTGAGCTGGCACCGCTTGAACATGAAGAGTTTGGCATCA
TCCTGCTCGATAATCAGAATCAGCTGCTGCACCGCGAAATCCTGTTCAGGGGTACGTTAAACTCGGTCAGCGTTCACCCC
CGTGAAGTTATTAAGCGTGTACTGAAAAATAACGCCGCCGCAGTCATCCTTGTCCACAACCACCCCAGCGGCGAGCCTGA
ACCCAGCCGGTGTGACATCCAGTTGACCAAAAAGCTTCAGGAGCTGCTGGAAATGCTGGATGTCCGGTTGCTTGACCACT
TTATCGTGGCGGGGACTGAAACGGTGTCGATGGCTGAACGGGGGCTGGTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(31-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.218

79.333

0.367

Multiple sequence alignment