Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LTWDN19_RS02210 Genome accession   NZ_AP024685
Coordinates   409524..410195 (-) Length   223 a.a.
NCBI ID   WP_069468256.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WDN19     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404524..415195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTWDN19_RS02185 (LTWDN19_04490) rpsO 404838..405107 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  LTWDN19_RS02190 (LTWDN19_04500) rpsT 405384..405638 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  LTWDN19_RS02195 (LTWDN19_04510) holA 405693..406721 (-) 1029 WP_069468254.1 DNA polymerase III subunit delta -
  LTWDN19_RS02200 (LTWDN19_04520) comEC 406722..408836 (-) 2115 WP_231118784.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LTWDN19_RS02205 (LTWDN19_04530) - 408977..409465 (-) 489 WP_004270740.1 ComE operon protein 2 -
  LTWDN19_RS02210 (LTWDN19_04540) comEA 409524..410195 (-) 672 WP_069468256.1 helix-hairpin-helix domain-containing protein Machinery gene
  LTWDN19_RS02215 (LTWDN19_04550) - 410272..411318 (-) 1047 WP_221276668.1 SepM family pheromone-processing serine protease -
  LTWDN19_RS02220 (LTWDN19_04560) coaD 411320..411814 (-) 495 WP_039099191.1 pantetheine-phosphate adenylyltransferase -
  LTWDN19_RS02225 (LTWDN19_04570) rsmD 411826..412380 (-) 555 WP_039099193.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LTWDN19_RS02230 (LTWDN19_04580) - 412386..412676 (-) 291 WP_004270748.1 YlbG family protein -
  LTWDN19_RS02235 (LTWDN19_04590) - 412696..413784 (-) 1089 WP_065825727.1 CAP-associated domain-containing protein -
  LTWDN19_RS02240 (LTWDN19_04600) - 413797..414984 (-) 1188 WP_004270744.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24849.55 Da        Isoelectric Point: 10.0133

>NTDB_id=87518 LTWDN19_RS02210 WP_069468256.1 409524..410195(-) (comEA) [Latilactobacillus curvatus strain WDN19]
MWRDYWQRYRRFWWVPCLVIILLGGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSVSKGGFVDIKGAVAHPG
IYPICVAKTRLFEVLKQAGDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAADEPQAATDNQAGASPISTDA
KINLNQADATQLKTLNGIGPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=87518 LTWDN19_RS02210 WP_069468256.1 409524..410195(-) (comEA) [Latilactobacillus curvatus strain WDN19]
ATGTGGCGCGACTATTGGCAACGGTATCGTCGATTCTGGTGGGTACCTTGTTTGGTGATAATTTTACTTGGTGGTGGTGT
GTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGATGGCGCAATCAACTAAGCGAAAAGTGA
AGGCAAAACCCGTCAAACAGAAGAAAAGCGTCTCAAAAGGTGGGTTTGTCGATATTAAAGGCGCTGTGGCACATCCAGGG
ATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCGGGGGATGTGACCGAAGCAGCGGATAC
GAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTTATTATCTATGTGCCAACTAAGGGAGAAGCGGTGCAAGCCG
AAGAATTAGTGAAAGCGGCAGACGAGCCACAGGCTGCGACTGACAATCAAGCGGGAGCCAGTCCGATATCAACTGATGCT
AAAATCAACCTAAACCAAGCGGATGCGACACAATTGAAAACGCTAAATGGCATCGGTCCTAAAAAAGCTGAACAAATAAT
TGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGTTGGGGGAATTGGGCCGAAAACGTTTG
AACAATTACGGCCACAAATTTGTGTTAATTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(160-221)

SLBB domain (SLBB)

(70-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

64.103

100

0.673
  comEA Lactococcus lactis subsp. cremoris KW2

35.841

100

0.363

Multiple sequence alignment