Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LTWDN19_RS02200 Genome accession   NZ_AP024685
Coordinates   406722..408836 (-) Length   704 a.a.
NCBI ID   WP_231118784.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WDN19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401722..413836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTWDN19_RS02175 (LTWDN19_04470) - 401890..402834 (-) 945 WP_069468252.1 hypothetical protein -
  LTWDN19_RS02180 (LTWDN19_04480) - 402917..404635 (-) 1719 WP_069468253.1 ribonuclease J -
  LTWDN19_RS02185 (LTWDN19_04490) rpsO 404838..405107 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  LTWDN19_RS02190 (LTWDN19_04500) rpsT 405384..405638 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  LTWDN19_RS02195 (LTWDN19_04510) holA 405693..406721 (-) 1029 WP_069468254.1 DNA polymerase III subunit delta -
  LTWDN19_RS02200 (LTWDN19_04520) comEC 406722..408836 (-) 2115 WP_231118784.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LTWDN19_RS02205 (LTWDN19_04530) - 408977..409465 (-) 489 WP_004270740.1 ComE operon protein 2 -
  LTWDN19_RS02210 (LTWDN19_04540) comEA 409524..410195 (-) 672 WP_069468256.1 helix-hairpin-helix domain-containing protein Machinery gene
  LTWDN19_RS02215 (LTWDN19_04550) - 410272..411318 (-) 1047 WP_221276668.1 SepM family pheromone-processing serine protease -
  LTWDN19_RS02220 (LTWDN19_04560) coaD 411320..411814 (-) 495 WP_039099191.1 pantetheine-phosphate adenylyltransferase -
  LTWDN19_RS02225 (LTWDN19_04570) rsmD 411826..412380 (-) 555 WP_039099193.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LTWDN19_RS02230 (LTWDN19_04580) - 412386..412676 (-) 291 WP_004270748.1 YlbG family protein -
  LTWDN19_RS02235 (LTWDN19_04590) - 412696..413784 (-) 1089 WP_065825727.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 79807.20 Da        Isoelectric Point: 9.4030

>NTDB_id=87516 LTWDN19_RS02200 WP_231118784.1 406722..408836(-) (comEC) [Latilactobacillus curvatus strain WDN19]
MVSGLVLCLGGCRFWLARRTYEQPVRPNNQVYKIQPDTIKVAGDQIQLMAQGQNDDQRVVCYYRCQSSAEKRRWQTTNQP
LLLAGDIELERIQGATNRNEFDYARFMGQQKHCFYQANIIDGTVFRRIPPQGWLDWFHQRRQQGLIYLRQLPPALSFHAE
ALLCGVRESDGLAYQNVLGQLGIIHLLSLSGLHVFYFVTIIRRLATLCRVPREWVNVSLFCLLPLYALFVGGGTSITRAI
GLILLRLICEVSHFQQSRLDSWSWVLLVNLLWQPYLLISMGGLLSYLMAFGLIYQRRHGTFTTAFWLGLLSLPVCLRFNY
RWHILTILINGIVAPIFLPVMLGLIMVAICLWPVSHMIVWLEEGLLTTLYKGLAWIATFPYATITFGKIQLIPLFLIVIG
TLWLMASTGRRAKWGWGAVISLYVISFIGIHFNPVGRVIMFDIGQGDSLLIQQPFNRHNLLIDTGGRLALPQEKWQRRQI
VSRAEKVTVNYLYSCGIDHLEAIALSHQDADHIGDLNEIMQHIRVKRLICAAGLPQNRQFQRQVRPHLTKVAIEPYLADQ
HFMIGHQQINVLAPVVAGPGGNADSLVLQTQIGGASWLFTGDLEKAGEVAIVDRYPQLRVDYLKVGHHGSQTASDPQSIA
TWQVKGALISAGRHNRYGHPHAATLQTLKRANVPFWNTADCGMLEWRYGFGQVPMIKTTLKDCD

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=87516 LTWDN19_RS02200 WP_231118784.1 406722..408836(-) (comEC) [Latilactobacillus curvatus strain WDN19]
ATGGTCAGTGGACTGGTACTGTGTTTAGGCGGTTGCCGTTTTTGGCTGGCACGGCGCACCTACGAACAGCCGGTTAGACC
AAATAATCAAGTATATAAGATTCAACCCGATACGATCAAAGTGGCTGGCGATCAGATTCAATTAATGGCGCAGGGGCAGA
ATGATGACCAACGTGTTGTTTGCTACTATCGCTGCCAGAGTTCAGCGGAAAAACGCCGTTGGCAAACGACGAATCAGCCG
TTATTATTAGCGGGTGATATTGAATTAGAGCGTATCCAAGGTGCTACTAACCGGAATGAGTTCGACTATGCGCGCTTTAT
GGGGCAGCAAAAGCATTGTTTTTATCAAGCAAATATAATTGACGGAACGGTCTTTAGACGCATTCCACCACAAGGTTGGC
TAGATTGGTTCCACCAACGGCGCCAACAGGGGCTGATTTATCTCCGACAATTGCCACCAGCGTTGAGTTTTCATGCAGAG
GCGTTGTTATGTGGTGTTCGAGAGTCAGATGGCCTGGCCTACCAGAATGTGTTAGGTCAATTGGGGATTATTCATTTATT
GAGTTTATCCGGATTGCATGTATTCTACTTTGTGACAATCATTCGTCGATTGGCAACGCTGTGTCGAGTCCCGCGTGAAT
GGGTGAATGTTAGCTTGTTTTGTTTGCTACCCCTTTATGCGTTGTTTGTGGGGGGAGGCACGAGTATTACACGCGCTATC
GGGCTGATCTTACTACGATTAATCTGCGAAGTAAGTCATTTTCAGCAATCGCGTTTAGATAGTTGGAGTTGGGTATTGCT
GGTCAATCTTTTATGGCAGCCGTATTTATTAATCAGTATGGGGGGATTGCTGAGCTATCTGATGGCTTTTGGATTGATTT
ATCAGCGGCGCCATGGTACTTTTACAACGGCATTTTGGCTAGGCTTGTTAAGTTTACCGGTGTGCTTGCGGTTTAATTAT
CGTTGGCATATCTTGACGATTTTGATTAATGGGATTGTCGCGCCGATTTTCTTACCAGTCATGTTGGGTTTGATTATGGT
AGCGATTTGCTTATGGCCTGTTAGTCATATGATAGTTTGGTTAGAAGAAGGCCTGCTAACGACGCTGTATAAAGGATTAG
CTTGGATTGCAACGTTCCCATATGCGACAATTACTTTCGGTAAAATCCAGCTAATACCACTCTTTTTAATTGTGATAGGC
ACACTATGGTTGATGGCAAGTACTGGTCGGCGAGCAAAGTGGGGCTGGGGGGCTGTTATCAGCCTGTATGTCATTAGTTT
TATTGGTATCCACTTTAATCCGGTTGGCCGCGTGATTATGTTTGATATCGGGCAAGGCGATAGCCTGTTGATTCAACAAC
CCTTCAATCGACATAACCTGTTAATTGACACCGGCGGCCGACTAGCTTTACCGCAAGAAAAGTGGCAACGGCGGCAAATT
GTGAGTCGGGCGGAAAAAGTAACAGTTAATTACCTCTACAGCTGTGGCATTGATCATTTAGAGGCAATCGCATTATCGCA
TCAGGATGCTGATCATATAGGGGACTTAAATGAAATTATGCAACATATCCGAGTTAAACGGTTGATTTGTGCTGCGGGCT
TACCGCAAAACCGGCAGTTTCAACGGCAAGTGCGGCCGCATCTTACAAAAGTTGCAATTGAGCCTTATTTGGCGGACCAA
CATTTTATGATTGGTCACCAACAAATCAATGTGTTAGCACCAGTGGTGGCCGGACCAGGCGGGAATGCTGACTCACTCGT
TTTGCAAACGCAAATTGGTGGTGCGAGTTGGTTATTTACTGGTGATTTAGAAAAAGCGGGTGAAGTGGCAATCGTTGATC
GCTACCCACAATTACGCGTTGATTACCTAAAGGTGGGTCACCATGGCAGTCAAACGGCGAGTGACCCCCAGTCAATTGCG
ACGTGGCAGGTAAAAGGGGCGTTGATTTCTGCGGGACGCCATAATCGTTATGGTCATCCACATGCCGCAACGTTGCAGAC
TTTAAAACGTGCGAACGTCCCATTTTGGAATACGGCTGACTGTGGGATGCTGGAATGGCGCTATGGTTTTGGCCAAGTGC
CAATGATTAAAACAACACTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(444-651)

Competence protein (Competence)

(173-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

62.942

100

0.632

Multiple sequence alignment