Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LTWDN19_RS01810 Genome accession   NZ_AP024685
Coordinates   325548..326414 (-) Length   288 a.a.
NCBI ID   WP_221276646.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WDN19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 320548..331414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTWDN19_RS01795 (LTWDN19_03630) topA 321804..323888 (-) 2085 WP_221276643.1 type I DNA topoisomerase -
  LTWDN19_RS01800 (LTWDN19_03640) - 324123..324566 (-) 444 WP_221276644.1 Rrf2 family transcriptional regulator -
  LTWDN19_RS01805 (LTWDN19_03650) - 324599..325453 (-) 855 WP_221276645.1 SDR family oxidoreductase -
  LTWDN19_RS01810 (LTWDN19_03660) dprA 325548..326414 (-) 867 WP_221276646.1 DNA-processing protein DprA Machinery gene
  LTWDN19_RS01815 (LTWDN19_03670) - 326465..327226 (-) 762 WP_039099416.1 ribonuclease HII -
  LTWDN19_RS01820 (LTWDN19_03680) ylqF 327226..328077 (-) 852 WP_162145192.1 ribosome biogenesis GTPase YlqF -
  LTWDN19_RS01825 (LTWDN19_03690) lepB 328321..328875 (-) 555 WP_052202764.1 signal peptidase I -
  LTWDN19_RS01830 (LTWDN19_03710) - 328875..329099 (-) 225 WP_004270292.1 YozE family protein -
  LTWDN19_RS01835 (LTWDN19_03720) - 329109..329741 (-) 633 WP_039099418.1 YpmS family protein -
  LTWDN19_RS01840 (LTWDN19_03730) - 329756..330661 (-) 906 WP_064777126.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31732.72 Da        Isoelectric Point: 7.9599

>NTDB_id=87514 LTWDN19_RS01810 WP_221276646.1 325548..326414(-) (dprA) [Latilactobacillus curvatus strain WDN19]
MLTKKQLLLKVHLADGFGPISELRLAAWLVTSHNWALSALEIAQIACLPERYWLTFQTSFDSLALQQKCATHERYVQYLT
ILEADYPQRLLETHCPPTVLFYRGDLSVLKQPCVAVVGARQATEYTKQALRHLLGLPQTTTIISGLAQGADAMAHEVALQ
KGLRPIGVIGTGLNCYYPPQNEHLQQAVAEKGLLISEYGLDVTAKKHHFPARNRIIAGLCHSLVVTEARQKSGSLITANL
ALQANRNVYALPGQVNHSLSAGCNQLILAGATPLLNQQLLLDELHYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=87514 LTWDN19_RS01810 WP_221276646.1 325548..326414(-) (dprA) [Latilactobacillus curvatus strain WDN19]
GTGTTGACTAAAAAGCAATTATTATTGAAAGTACACCTGGCAGATGGGTTTGGCCCCATCAGTGAATTACGCTTAGCCGC
ATGGTTAGTAACGAGTCACAATTGGGCGTTATCGGCACTGGAGATTGCGCAGATTGCGTGTTTACCGGAGCGATATTGGC
TGACCTTTCAGACTAGTTTTGACAGTCTAGCTCTGCAACAGAAGTGTGCCACGCATGAACGTTATGTTCAGTATCTGACG
ATTCTAGAAGCAGATTATCCGCAACGGTTGTTAGAAACCCATTGTCCGCCAACAGTTTTATTTTATCGCGGCGATTTAAG
TGTTTTGAAACAGCCATGTGTTGCGGTGGTTGGTGCGCGGCAAGCCACGGAGTATACTAAGCAAGCCCTGCGGCATTTAT
TGGGATTACCACAAACAACGACGATTATCAGTGGTTTAGCTCAAGGGGCGGATGCGATGGCGCATGAAGTTGCACTCCAA
AAAGGGTTACGACCGATTGGCGTGATTGGAACGGGCTTGAATTGTTATTACCCACCACAAAACGAACACTTGCAACAGGC
GGTCGCTGAAAAAGGGTTATTGATATCAGAATACGGTTTGGACGTAACGGCTAAGAAGCACCACTTCCCAGCCCGAAATC
GGATTATTGCCGGACTTTGTCATAGTTTAGTGGTCACAGAAGCCCGCCAAAAAAGTGGTAGCTTAATCACCGCTAATTTA
GCATTACAAGCCAATCGTAACGTATATGCCTTACCGGGCCAGGTTAATCATTCATTATCGGCAGGCTGTAATCAACTGAT
TTTAGCCGGTGCAACGCCGCTTTTAAATCAACAATTGTTATTGGACGAGTTGCATTATTTTGATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

76.389

100

0.764
  dprA Legionella pneumophila strain ERS1305867

36.519

100

0.372

Multiple sequence alignment