Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RE735_RS11790 Genome accession   NZ_CP133585
Coordinates   2190615..2191517 (-) Length   300 a.a.
NCBI ID   WP_309173175.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2185615..2196517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS11775 (RE735_11775) xerC 2185990..2186907 (-) 918 WP_309173172.1 tyrosine recombinase XerC -
  RE735_RS11780 (RE735_11780) trmFO 2186970..2188274 (-) 1305 WP_309173173.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RE735_RS11785 (RE735_11785) topA 2188345..2190420 (-) 2076 WP_309173174.1 type I DNA topoisomerase -
  RE735_RS11790 (RE735_11790) dprA 2190615..2191517 (-) 903 WP_309173175.1 DNA-processing protein DprA Machinery gene
  RE735_RS11795 (RE735_11795) sucD 2191581..2192483 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  RE735_RS11800 (RE735_11800) sucC 2192506..2193666 (-) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  RE735_RS11805 (RE735_11805) - 2193843..2194118 (-) 276 WP_309173176.1 FlhB-like flagellar biosynthesis protein -
  RE735_RS11810 (RE735_11810) - 2194115..2195848 (-) 1734 WP_309173177.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34009.43 Da        Isoelectric Point: 8.8758

>NTDB_id=875118 RE735_RS11790 WP_309173175.1 2190615..2191517(-) (dprA) [Bacillus aerius strain NEB1378]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPIYPSALKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVPMAQYMGERHLLLSEHPPYIKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSLTGVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=875118 RE735_RS11790 WP_309173175.1 2190615..2191517(-) (dprA) [Bacillus aerius strain NEB1378]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGTTATATATCAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATACCTATCACATCACCTATATATCCCAGCGCATTAAAACACATTTATGATCCTCCCCCAGTGTTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGTGAACTTGTAGAAGAAGACTGGATGATTGTGAGCGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAGGAGTGCATTAGGAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGTGGCTTTCAACATGTATATCCTAAAGAACATGT
GCCAATGGCTCAATATATGGGAGAACGTCATTTGCTGTTGTCAGAGCACCCGCCTTATATCAAACCAGAAAAATGGCACT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAAAGGAACCATTGTCATCCAGTGCAAAGAAAAGAGCGGTTCACTT
ATTACAGCCTACCAGGCGTTAGAGCAAGGAAAAGAAGTATTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTACAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGACTGGTG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.007

95.667

0.517
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383
  dprA Lactococcus lactis subsp. cremoris KW2

38.676

95.667

0.37