Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RE735_RS08925 Genome accession   NZ_CP133585
Coordinates   1651476..1653209 (+) Length   577 a.a.
NCBI ID   WP_309175352.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1646476..1658209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS08900 (RE735_08900) - 1646581..1646841 (+) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -
  RE735_RS08905 (RE735_08905) - 1646825..1647721 (+) 897 WP_373467198.1 polyprenyl synthetase family protein -
  RE735_RS08910 (RE735_08910) dxs 1647873..1649774 (+) 1902 WP_007501165.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RE735_RS08915 (RE735_08915) - 1649771..1650625 (+) 855 WP_309175350.1 TlyA family RNA methyltransferase -
  RE735_RS08920 (RE735_08920) ahrC 1650992..1651441 (+) 450 WP_309175351.1 transcriptional regulator AhrC/ArgR -
  RE735_RS08925 (RE735_08925) recN 1651476..1653209 (+) 1734 WP_309175352.1 DNA repair protein RecN Machinery gene
  RE735_RS08930 (RE735_08930) spoIVB 1653408..1654685 (+) 1278 WP_309175353.1 SpoIVB peptidase -
  RE735_RS08935 (RE735_08935) spo0A 1654969..1655772 (+) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  RE735_RS08940 (RE735_08940) - 1656222..1657322 (+) 1101 WP_309175354.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64636.63 Da        Isoelectric Point: 4.7121

>NTDB_id=875111 RE735_RS08925 WP_309175352.1 1651476..1653209(+) (recN) [Bacillus aerius strain NEB1378]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFVLC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLELGEDEKLQEERHQISNFEKVFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKQIQAELKDLYMEKSSFDTAFMI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFIISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEVGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=875111 RE735_RS08925 WP_309175352.1 1651476..1653209(+) (recN) [Bacillus aerius strain NEB1378]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCGTTTGAAAAAGGACTCACCGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTCGTAGGGGGAAGAGGATCATCTGAAT
TTGTCCGTTACGGCGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGTCCTTTGT
GAGGAGCAAGGAATTGATGCATCTGACGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAGAGCATCTGCCG
CATTAATGGTAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAGGATGAAAATCATTTGCATTTGCTTGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTCTCG
CAGTATCAGGAAGCGTATGATCAATATATGAAGACAGCGCAAAAGCTCAAACAGCTGTCTGAAAATGAACAGGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTGGAGGAGATTGAAGCGGCACAATTAGAGCTTGGAGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATTAGCAATTTTGAAAAAGTCTTTTCCTCGCTTCAAAACGCATATAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGAATGGCTTCAAGCGAGCTTGAGCAAGTTTCTGAGATCAACGACGATCTGAAAAAGCT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTAGAAGATTCTACTTTTCAAATGCGCAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTTATTGAGTCTAGGCTAAATGAGATGAAGCAGCTGAAGCGAAAGTACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTCAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCAAATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTATGATT
CGATATGCACCATTTGGTAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTTGGGAAAAACGGCATAGATCA
AGCGCAATTTATCATTTCTACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCGC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACAGGT
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTTGCAGCAGGCTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTCGCAGCAATGGCTGATACACATCTTTTTATTTCTAAACGCGCTAAAGCTGGTAGAACAATGACGAACG
TCAAACCACTAAGTGATGATGAAAAAGTGAGTGAAGTTGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.563

100

0.756