Detailed information NTG0875056

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RE395_RS16145
• Genome accession: NZ_CP133579
• Coordinates: 3492004..3493377 (+)
• Length: 457 a.a.
• NCBI ID: WP_049454795.1
• Uniprot ID: -
• Organism: Stenotrophomonas geniculata strain G303
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3487004..3498377

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RE395_RS16130	sucD	3487859..3488734 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
RE395_RS16135	sucC	3488755..3489924 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
RE395_RS16140	-	3490330..3491943 (+)	1614	WP_419965227.1	sensor histidine kinase	-
RE395_RS16145	pilR	3492004..3493377 (+)	1374	WP_049454795.1	sigma 54-interacting transcriptional regulator	Regulator
RE395_RS16150	-	3493653..3493949 (+)	297	WP_010481512.1	hypothetical protein	-
RE395_RS16155	pilB	3493992..3495719 (-)	1728	WP_313509581.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RE395_RS16160	-	3495911..3498064 (-)	2154	WP_313509579.1	sulfatase-like hydrolase/transferase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49519.82 Da
• Isoelectric Point: 6.5844

>NTDB_id=875056 RE395_RS16145 WP_049454795.1 3492004..3493377(+) (pilR) [Stenotrophomonas geniculata strain G303]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPGPATEQAARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPNEEPVDVRILSATHRDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAHYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRAPGGAAPAEAV
ADLQPGGAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=875056 RE395_RS16145 WP_049454795.1 3492004..3493377(+) (pilR) [Stenotrophomonas geniculata strain G303]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAAGCACGCGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTTCCGGATGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACTGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAACTCAACAACACCGAACGCCCTGCGCCCGGCCCCGCCA
CCGAACAGGCTGCACGCCTGCTGGGCGCTTCGCCGGCCATGGACGTGTTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGGGTTGGCAAGGAACTGGTCGCTCGCACCATCCACGCCCAGGGCGCGCG
TGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTTGGCCACCGCA
AAGGCAGCTTCAGCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAAGCCGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAACTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTCGGTGCGCC
CAACGAAGAGCCGGTGGACGTGCGCATTCTCTCGGCCACGCACCGTGACCTGGCCGAACTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAGCTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAG
CTGGCGGCCGCCGTGCTGGCGCGGCTGGCCCGCAGCCACGGCCGTGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAGGC
GCTGGCCCACTATGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTGGAACGCGCGCTGGCACTGGCCGAAGAAG
ACCGCATCGGTGCCGACGACCTGCGCCTGCCGCAGCACGCCCCGCGTGCGCCCGGCGGCGCAGCTCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCGGCGCCGCCCTGCCCTCGTACATCGAGCAACTGGAACGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGGATTACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.281	99.781	0.621
pilR	Acinetobacter baumannii strain A118	47.732	100	0.484