Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RDV90_RS20215 Genome accession   NZ_CP133578
Coordinates   4271518..4272042 (-) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter roggenkampii strain FACU     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4266518..4277042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV90_RS20190 - 4267036..4267707 (-) 672 WP_008503389.1 glutathione S-transferase family protein -
  RDV90_RS20195 soxR 4268082..4268540 (-) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  RDV90_RS20200 soxS 4268639..4268965 (+) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  RDV90_RS20205 - 4268972..4270537 (-) 1566 WP_309176010.1 EAL domain-containing protein -
  RDV90_RS20210 - 4271174..4271455 (+) 282 WP_008503385.1 YjcB family protein -
  RDV90_RS20215 ssb 4271518..4272042 (-) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RDV90_RS20220 uvrA 4272294..4275116 (+) 2823 WP_008503383.1 excinuclease ABC subunit UvrA -
  RDV90_RS20225 - 4275120..4275473 (-) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  RDV90_RS20230 - 4275476..4275892 (-) 417 WP_008503381.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RDV90_RS20235 aphA 4276006..4276719 (-) 714 WP_021242762.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=875042 RDV90_RS20215 WP_008503384.1 4271518..4272042(-) (ssb) [Enterobacter roggenkampii strain FACU]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=875042 RDV90_RS20215 WP_008503384.1 4271518..4272042(-) (ssb) [Enterobacter roggenkampii strain FACU]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGGC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368