Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | RDV79_RS10560 | Genome accession | NZ_CP133573 |
| Coordinates | 2383804..2384124 (+) | Length | 106 a.a. |
| NCBI ID | WP_005309580.1 | Uniprot ID | K1K148 |
| Organism | Aeromonas dhakensis strain 202108B1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2378804..2389124
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RDV79_RS10535 (RDV79_10535) | - | 2379440..2380075 (-) | 636 | WP_010636289.1 | hemolysin III family protein | - |
| RDV79_RS10540 (RDV79_10540) | - | 2380294..2381799 (+) | 1506 | WP_043171883.1 | pyridoxal-dependent decarboxylase | - |
| RDV79_RS10545 (RDV79_10545) | - | 2381904..2382467 (+) | 564 | WP_005309592.1 | septation protein A | - |
| RDV79_RS10550 (RDV79_10550) | - | 2382492..2382788 (+) | 297 | WP_005309589.1 | YciI family protein | - |
| RDV79_RS10555 (RDV79_10555) | cysQ | 2382867..2383637 (-) | 771 | WP_043171882.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| RDV79_RS10560 (RDV79_10560) | comEA | 2383804..2384124 (+) | 321 | WP_005309580.1 | ComEA family DNA-binding protein | Machinery gene |
| RDV79_RS10565 (RDV79_10565) | galU | 2384220..2385131 (+) | 912 | WP_043171881.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| RDV79_RS10570 (RDV79_10570) | - | 2385345..2386742 (+) | 1398 | WP_005309573.1 | peptide MFS transporter | - |
| RDV79_RS10575 (RDV79_10575) | - | 2386805..2387776 (-) | 972 | WP_254196723.1 | response regulator | - |
| RDV79_RS10580 (RDV79_10580) | - | 2388133..2388810 (+) | 678 | WP_005309566.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11183.03 Da Isoelectric Point: 9.5773
>NTDB_id=875005 RDV79_RS10560 WP_005309580.1 2383804..2384124(+) (comEA) [Aeromonas dhakensis strain 202108B1]
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=875005 RDV79_RS10560 WP_005309580.1 2383804..2384124(+) (comEA) [Aeromonas dhakensis strain 202108B1]
ATGAACTACAAGACCCTGACCGCCACCTTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCAAACCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACTGCACTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAGCTTGCCGATGTCAGCGGTATCGGGCCGGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A
ATGAACTACAAGACCCTGACCGCCACCTTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCAAACCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACTGCACTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAGCTTGCCGATGTCAGCGGTATCGGGCCGGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
53.636 |
100 |
0.557 |
| comEA | Vibrio cholerae strain A1552 |
53.636 |
100 |
0.557 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.144 |
100 |
0.462 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
47.423 |
91.509 |
0.434 |
| comEA | Legionella pneumophila strain ERS1305867 |
41.837 |
92.453 |
0.387 |
| comEA | Legionella pneumophila str. Paris |
41.837 |
92.453 |
0.387 |
| comEA/celA/cilE | Streptococcus mitis NCTC 12261 |
52.632 |
71.698 |
0.377 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
63.492 |
59.434 |
0.377 |