Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WHL52_RS05230 Genome accession   NZ_CP149576
Coordinates   1009396..1010040 (+) Length   214 a.a.
NCBI ID   WP_003245647.1    Uniprot ID   O07528
Organism   Bacillus subtilis strain DSM 10     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004396..1015040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS05215 glpD 1004567..1006234 (+) 1668 WP_003233382.1 glycerol-3-phosphate dehydrogenase -
  WHL52_RS05220 pgcA 1006366..1008111 (+) 1746 WP_003244986.1 phosphoglucomutase -
  WHL52_RS05225 yhcY 1008260..1009399 (+) 1140 WP_003245750.1 two-component system sensor histidine kinase YhcY -
  WHL52_RS05230 vraR 1009396..1010040 (+) 645 WP_003245647.1 two-component system response regulator YhcZ Regulator
  WHL52_RS05235 yhdA 1010037..1010561 (+) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  WHL52_RS05240 yhdB 1010576..1010818 (-) 243 WP_003233373.1 YhdB family protein -
  WHL52_RS05245 yhdC 1011019..1011342 (+) 324 WP_003233371.1 YqzG/YhdC family protein -
  WHL52_RS05250 lytF 1011384..1012850 (-) 1467 WP_003244874.1 peptidoglycan endopeptidase LytF -
  WHL52_RS05255 nsrR 1013003..1013443 (-) 441 WP_003245378.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24022.59 Da        Isoelectric Point: 6.3034

>NTDB_id=874913 WHL52_RS05230 WP_003245647.1 1009396..1010040(+) (vraR) [Bacillus subtilis strain DSM 10]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEI
ANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=874913 WHL52_RS05230 WP_003245647.1 1009396..1010040(+) (vraR) [Bacillus subtilis strain DSM 10]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCCCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATT
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGACAC
ATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAAATA
GCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAATCT
TTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCTCAA
AATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O07528

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.664

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.411