Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q0W94_RS03490 Genome accession   NZ_AP024678
Coordinates   708865..710556 (+) Length   563 a.a.
NCBI ID   WP_297761184.1    Uniprot ID   A0A915V567
Organism   MAG: Thermosynechococcus sp. isolate KatS3mg067     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 703865..715556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0W94_RS03470 (KatS3mg067_0682) - 704703..705440 (-) 738 WP_297761176.1 pilus assembly protein PilO -
  Q0W94_RS03475 (KatS3mg067_0683) - 705437..706138 (-) 702 WP_297761179.1 PilN domain-containing protein -
  Q0W94_RS03480 (KatS3mg067_0684) pilM 706150..707229 (-) 1080 WP_315863084.1 type IV pilus biogenesis protein PilM Machinery gene
  Q0W94_RS03485 (KatS3mg067_0685) - 707516..708745 (-) 1230 WP_297761182.1 acetate/propionate family kinase -
  Q0W94_RS03490 (KatS3mg067_0686) comA 708865..710556 (+) 1692 WP_297761184.1 phospholipase D-like domain-containing protein Machinery gene
  Q0W94_RS03495 (KatS3mg067_0687) - 710577..711089 (-) 513 WP_297761187.1 adenine phosphoribosyltransferase -
  Q0W94_RS03500 (KatS3mg067_0688) - 711361..713061 (+) 1701 WP_297761190.1 hypothetical protein -
  Q0W94_RS03505 (KatS3mg067_0689) - 713080..713871 (+) 792 WP_297761193.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q0W94_RS03510 (KatS3mg067_0690) - 713849..714361 (+) 513 WP_297761196.1 GspH/FimT family protein -
  Q0W94_RS03515 (KatS3mg067_0691) - 714374..715033 (+) 660 WP_297761199.1 type II secretion system protein J -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 62812.66 Da        Isoelectric Point: 9.6811

>NTDB_id=87486 Q0W94_RS03490 WP_297761184.1 708865..710556(+) (comA) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
MFWQKLKWRRQGVYLLLFLLGVLIAAVVLTQLRSHPIIRPSLNPLPQHPQIAVHMNHSQAHSYQEPYRPYTRAGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALAARQQAGVRVRVVMENTYTAPWAKYSAAEVSAMDPRMQERYNDWKTLVDTNG
DGQLSAAELSDRDVQTILNKAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDIHGDIGRPDTRGNANSLL
VIDSPAVARLFTEEFNLLWGDGPGGKPDSRFGVNKPVRPPQQVAVGDARVTVRFSPTPSSQPWSVSTNGLIGQILRQARQ
KIDMALFVLSDQELSYVLEERHNQGVAIRALIDSGFIYRDFSEALDMMGVAMANTAQVRRGKCFYEAGNRPWPNPIQTVG
TPLLPEGDKLHHKYGVVDNRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYERQFERLYSHSRLGLPQFIRDRLQQQL
TACGGKIATRPAAANRARPPSARVNLNTATATELETLPGVGPKLAAEIIRTREQKPFNSLADLDAVPGVGPKLLDRLRDR
VTW

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=87486 Q0W94_RS03490 WP_297761184.1 708865..710556(+) (comA) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
ATGTTTTGGCAAAAGCTGAAATGGCGGCGACAGGGTGTGTATCTACTGTTGTTTCTCCTGGGGGTGTTGATTGCGGCAGT
GGTGCTTACCCAATTGCGATCGCACCCGATTATCCGCCCTTCCCTAAACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAACCATTCCCAAGCCCACAGCTACCAAGAACCCTATCGCCCCTATACCCGTGCAGGCGAAGACCTTGAGGCCATC
ATGATTGAGCAGATTGCCAAAGCACAAAAGACCATTGATGTGGCGGTGCAGGAGTTTCGTCTACCAAATTTGGCAAAGGC
TCTCGCAGCACGGCAGCAGGCAGGCGTACGGGTACGGGTGGTTATGGAGAATACCTACACTGCCCCCTGGGCAAAATACA
GTGCGGCTGAAGTGAGTGCCATGGATCCAAGGATGCAGGAGCGCTATAACGACTGGAAAACGCTTGTGGATACCAACGGC
GATGGTCAACTCAGTGCAGCGGAACTGAGCGATCGCGACGTGCAGACCATTCTCAACAAGGCGAAGATTCCTTGGATAGA
TGATACGGCCGATGGCTCCAAGGGCAGCATGCTCATGCACCACAAATTTATCGTCATTGACAATCGCCAAGTCATTGCCA
CCACTGCCAACTTTACCCTCAGCGATATTCACGGAGACATAGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTA
GTAATTGACAGCCCGGCTGTGGCGCGCCTATTTACAGAGGAATTTAACCTCCTGTGGGGGGATGGTCCTGGGGGTAAACC
CGATAGTCGCTTTGGGGTCAACAAGCCCGTGCGTCCTCCCCAACAAGTCGCTGTTGGCGATGCCAGGGTCACGGTGCGCT
TTTCCCCCACCCCAAGCTCGCAACCTTGGTCGGTGTCCACGAATGGATTAATTGGTCAAATCCTTCGTCAGGCTCGCCAA
AAAATTGATATGGCGCTTTTTGTCTTGTCAGATCAGGAGTTGTCCTACGTGCTGGAGGAACGCCATAACCAAGGGGTTGC
CATTCGCGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCTTTGGACATGATGGGCGTGGCCATGGCCA
ATACAGCCCAAGTCCGACGGGGAAAGTGCTTCTACGAAGCCGGCAACCGCCCCTGGCCAAACCCAATTCAGACGGTGGGA
ACGCCCCTACTGCCGGAGGGGGATAAGCTGCACCACAAGTACGGCGTAGTGGACAATCGCACGGTGATTGTGGGTTCCCA
CAACTGGTCAGAGGCGGCCAACCGCGGTAACGATGAATTTTTGCTGGTCATCGAGCATCCGACGGTTGCAGCCCACTACG
AACGGCAGTTTGAACGGCTCTATAGCCACAGTCGTCTCGGTCTGCCGCAATTCATTCGCGATCGCCTCCAGCAACAGTTG
ACCGCCTGTGGCGGTAAGATTGCCACCCGACCCGCTGCCGCAAATCGTGCCCGCCCGCCTAGCGCGCGGGTCAATTTGAA
CACGGCGACCGCCACCGAACTGGAGACCCTGCCGGGCGTCGGCCCAAAACTAGCGGCCGAAATTATCCGTACCCGCGAGC
AAAAGCCTTTTAATTCCTTGGCGGATCTAGATGCCGTCCCCGGTGTTGGGCCGAAGCTCCTAGACCGCTTGCGCGATCGC
GTGACCTGGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(502-562)

PLD-like domain (PLDc_2)

(313-460)

PLD-like domain (PLDc_2)

(81-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.319

100

0.485

Multiple sequence alignment