Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   Q0W94_RS03480 Genome accession   NZ_AP024678
Coordinates   706150..707229 (-) Length   359 a.a.
NCBI ID   WP_315863084.1    Uniprot ID   A0A915V3S3
Organism   MAG: Thermosynechococcus sp. isolate KatS3mg067     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 701150..712229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0W94_RS03465 (KatS3mg067_0681) - 702455..704608 (-) 2154 WP_297761173.1 AMIN domain-containing protein -
  Q0W94_RS03470 (KatS3mg067_0682) - 704703..705440 (-) 738 WP_297761176.1 pilus assembly protein PilO -
  Q0W94_RS03475 (KatS3mg067_0683) - 705437..706138 (-) 702 WP_297761179.1 PilN domain-containing protein -
  Q0W94_RS03480 (KatS3mg067_0684) pilM 706150..707229 (-) 1080 WP_315863084.1 type IV pilus biogenesis protein PilM Machinery gene
  Q0W94_RS03485 (KatS3mg067_0685) - 707516..708745 (-) 1230 WP_297761182.1 acetate/propionate family kinase -
  Q0W94_RS03490 (KatS3mg067_0686) comA 708865..710556 (+) 1692 WP_297761184.1 phospholipase D-like domain-containing protein Machinery gene
  Q0W94_RS03495 (KatS3mg067_0687) - 710577..711089 (-) 513 WP_297761187.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39217.18 Da        Isoelectric Point: 4.2866

>NTDB_id=87485 Q0W94_RS03480 WP_315863084.1 706150..707229(-) (pilM) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
MLGNLFAKPKQGLGIELTPERVNIVQIQRQKQGLKMTAMASVPLAEGAIEEGRIIDTSAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRVIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGTSLDEDGIERVEILLVGTPREVTDAYINA
FTQAGLQLTALEVTNFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNRKVPIGKERMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLSDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASIGQVDEFFSQRLN
YATTLVDPISLLGLQTPEEIPLEKRPALGTVIGLSLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=87485 Q0W94_RS03480 WP_315863084.1 706150..707229(-) (pilM) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
GTGCTGGGAAACCTATTTGCAAAACCAAAGCAAGGCTTGGGGATTGAACTCACCCCAGAGCGGGTCAATATCGTGCAGAT
TCAGCGGCAAAAGCAGGGTCTAAAAATGACAGCCATGGCCTCAGTGCCCTTGGCTGAAGGCGCCATTGAAGAAGGCCGTA
TCATTGACACCAGCGCCGTTGCCGATGCCATCCGTCAAGGGATTGAGGATAAACGCATCAAACAAAAGGAGGTGATCAGT
GCCATTCCCATGAATGAAGCCGTGATTCGCGTGATTCGCCTGCCTGCTGAATTACCGGACTACGAATTGCGGGAAGTGGT
GCTCATGCAGGAAGCCCCCCTCTACCTCCCCTTTCCCCGCGAAGAGGCCGACGTCGATTACCAAAAGCTGGGAACCTCCC
TGGATGAAGATGGCATTGAGCGAGTAGAAATCCTGTTGGTGGGTACACCCCGCGAGGTAACCGATGCCTACATCAATGCC
TTTACCCAAGCTGGTTTGCAGCTGACCGCCCTTGAAGTCACGAACTTTGCCCTCATGCGTACCCTGCGGGATTCGCTACA
GCAGTTTGTGGGGGAAGCAGCAGCAATTATTGATATTGGCGACGAAGGCACAGAAATTAGCATCGTCAAGGATGGCATTC
CCCAGTTCAACCGCAAAGTGCCCATTGGCAAGGAACGGATGCAAGAAGCCATTAGCCGTGCCATGAACTTGCCCCCTTCG
ATGGGCGTTGACCTCATTGAGAATCTGACTGTTCCCCTAGAGCCGATGGATGTCACTGGGGCACTCAACCCCAGTGGTGC
CGCTATTTTGCGCGTGCTCTCCGATCTAGCCGATGAAATCCGCCGTTCTATTGACTTTTACCTGAACCAAGGGGAGAGCT
TAGAGGTCTCACAGTTGCTGCTTGCAGGTCCGGGTGCCAGTATTGGTCAAGTGGATGAGTTTTTTAGTCAGCGGCTCAAC
TATGCCACCACTTTAGTTGACCCCATTAGTTTGCTGGGGCTGCAAACCCCTGAAGAGATTCCCCTCGAAAAACGTCCTGC
CCTCGGTACAGTGATTGGTCTTAGTCTGCGTGGCGCTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

49.584

100

0.499

Multiple sequence alignment