Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   WJ399_RS29640 Genome accession   NZ_CP149513
Coordinates   6309936..6310460 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2023CK-01620     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6304936..6315460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ399_RS29625 (WJ399_29625) aroB 6306052..6307158 (-) 1107 WP_023096238.1 3-dehydroquinate synthase -
  WJ399_RS29630 (WJ399_29630) aroK 6307208..6307726 (-) 519 WP_003095833.1 shikimate kinase AroK -
  WJ399_RS29635 (WJ399_29635) pilQ 6307738..6309882 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  WJ399_RS29640 (WJ399_29640) comL/pilP 6309936..6310460 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  WJ399_RS29645 (WJ399_29645) pilO 6310457..6311080 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  WJ399_RS29650 (WJ399_29650) pilN 6311077..6311673 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  WJ399_RS29655 (WJ399_29655) pilM 6311673..6312737 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  WJ399_RS29660 (WJ399_29660) - 6312922..6315393 (+) 2472 WP_003125627.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=874856 WJ399_RS29640 WP_003095836.1 6309936..6310460(-) (comL/pilP) [Pseudomonas aeruginosa strain 2023CK-01620]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=874856 WJ399_RS29640 WP_003095836.1 6309936..6310460(-) (comL/pilP) [Pseudomonas aeruginosa strain 2023CK-01620]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362