Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RE438_RS21295 Genome accession   NZ_CP133557
Coordinates   4117405..4118199 (-) Length   264 a.a.
NCBI ID   WP_033657730.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain EPS29     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4112405..4123199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS21270 (RE438_21245) - 4113374..4113607 (+) 234 WP_001190198.1 DUF2627 domain-containing protein -
  RE438_RS21275 (RE438_21250) - 4113656..4114384 (-) 729 WP_048562340.1 glycerophosphodiester phosphodiesterase -
  RE438_RS21280 (RE438_21255) - 4114435..4114581 (+) 147 WP_001247671.1 YycC family protein -
  RE438_RS21285 (RE438_21260) - 4114768..4116294 (-) 1527 WP_048562339.1 glycosyltransferase family 39 protein -
  RE438_RS21290 (RE438_21265) - 4116588..4117151 (-) 564 WP_048562338.1 PRK06770 family protein -
  RE438_RS21295 (RE438_21270) spo0A 4117405..4118199 (-) 795 WP_033657730.1 sporulation transcription factor Spo0A Regulator
  RE438_RS21300 (RE438_21275) spoIVB 4118487..4119785 (-) 1299 WP_002096319.1 SpoIVB peptidase -
  RE438_RS21305 (RE438_21280) recN 4119904..4121643 (-) 1740 WP_048562337.1 DNA repair protein RecN Machinery gene
  RE438_RS21310 (RE438_21285) argR 4121909..4122358 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29443.15 Da        Isoelectric Point: 6.8438

>NTDB_id=874854 RE438_RS21295 WP_033657730.1 4117405..4118199(-) (spo0A) [Bacillus wiedmannii strain EPS29]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLNDMQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=874854 RE438_RS21295 WP_033657730.1 4117405..4118199(-) (spo0A) [Bacillus wiedmannii strain EPS29]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTACGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAATGATATGCAGCCGGATGTACTTG
TTTTAGACATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTGAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACCATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACGACAATAGATGGAAAGCCGAAAAACTTAGATGCAAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTATATGTATTTAAGGGAAGCGATCTCTATGGTGTACAATGATATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTCGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.15

100

0.811