Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RE438_RS21305 Genome accession   NZ_CP133557
Coordinates   4119904..4121643 (-) Length   579 a.a.
NCBI ID   WP_048562337.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain EPS29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4114904..4126643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS21290 (RE438_21265) - 4116588..4117151 (-) 564 WP_048562338.1 PRK06770 family protein -
  RE438_RS21295 (RE438_21270) spo0A 4117405..4118199 (-) 795 WP_033657730.1 sporulation transcription factor Spo0A Regulator
  RE438_RS21300 (RE438_21275) spoIVB 4118487..4119785 (-) 1299 WP_002096319.1 SpoIVB peptidase -
  RE438_RS21305 (RE438_21280) recN 4119904..4121643 (-) 1740 WP_048562337.1 DNA repair protein RecN Machinery gene
  RE438_RS21310 (RE438_21285) argR 4121909..4122358 (-) 450 WP_001032581.1 arginine repressor ArgR -
  RE438_RS21315 (RE438_21290) - 4122501..4123340 (-) 840 WP_001274750.1 TlyA family RNA methyltransferase -
  RE438_RS21320 (RE438_21295) dxs 4123344..4125236 (-) 1893 WP_000366437.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RE438_RS21325 (RE438_21300) ispA 4125539..4126429 (-) 891 WP_048562336.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65730.81 Da        Isoelectric Point: 4.7927

>NTDB_id=874855 RE438_RS21305 WP_048562337.1 4119904..4121643(-) (recN) [Bacillus wiedmannii strain EPS29]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEISKADLKMDEEIELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILQEATSLSTMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=874855 RE438_RS21305 WP_048562337.1 4119904..4121643(-) (recN) [Bacillus wiedmannii strain EPS29]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGGTTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATCATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGCTATTTTATGTAGAAGATGATAAGCATCCGTGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTGGTCACCCTTAGTATATTAAAGGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAGATCGCATTGTTAAACAATTG
GATATATATCAAAATGTATACGCTGACTATGAGAAATTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCAGTAAGGCAGATTTAAAGATGGATGAAGAAATTGAAT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGCGATGCATATCGCTCATTAAGCGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTTTATCAAGA
AAATCATGATTCAATTGCAAATAGCTACTACTTATTAGAAGAAGTTGCATATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAAGCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAATTAAAGGAATTAGAAAGTGTTATTCTGCAAGAAGCAACGTCGTTAAGTACTATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAGAAAACAAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCTGAAGAGCCTCTTGTGGAGGGTGCCCCGGTAAGACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGAATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCCGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599