Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RE438_RS06095 Genome accession   NZ_CP133557
Coordinates   1177971..1179797 (+) Length   608 a.a.
NCBI ID   WP_048559558.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain EPS29     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1172971..1184797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS06075 (RE438_06045) - 1173278..1173952 (-) 675 WP_000362605.1 TerC family protein -
  RE438_RS06080 (RE438_06050) mecA 1174295..1174978 (+) 684 WP_048559561.1 adaptor protein MecA Regulator
  RE438_RS06085 (RE438_06055) - 1175051..1176595 (+) 1545 WP_048559560.1 cardiolipin synthase -
  RE438_RS06090 (RE438_06060) - 1176676..1177920 (+) 1245 WP_048559559.1 competence protein CoiA -
  RE438_RS06095 (RE438_06065) pepF 1177971..1179797 (+) 1827 WP_048559558.1 oligoendopeptidase F Regulator
  RE438_RS06100 (RE438_06070) - 1179927..1180100 (-) 174 WP_046957017.1 hypothetical protein -
  RE438_RS06105 (RE438_06075) - 1180331..1181224 (-) 894 WP_046957018.1 ClpXP adapter SpxH family protein -
  RE438_RS06110 (RE438_06080) - 1181224..1181622 (-) 399 WP_000043382.1 hypothetical protein -
  RE438_RS06115 (RE438_06085) - 1181803..1182381 (-) 579 WP_048559557.1 CYTH domain-containing protein -
  RE438_RS06120 (RE438_06090) - 1182528..1182899 (+) 372 WP_001179996.1 hypothetical protein -
  RE438_RS06125 (RE438_06095) - 1182930..1183568 (+) 639 WP_001081480.1 GTP pyrophosphokinase family protein -
  RE438_RS06130 (RE438_06100) - 1183587..1184384 (+) 798 WP_000673190.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70283.53 Da        Isoelectric Point: 4.6201

>NTDB_id=874838 RE438_RS06095 WP_048559558.1 1177971..1179797(+) (pepF) [Bacillus wiedmannii strain EPS29]
MSEQNTAKTLPDRKEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDIYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLYTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEN

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=874838 RE438_RS06095 WP_048559558.1 1177971..1179797(+) (pepF) [Bacillus wiedmannii strain EPS29]
ATGTCTGAACAAAATACAGCAAAAACATTACCAGATCGCAAAGAAATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGACGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGTCAACGCCCGCACGTATTATCTGAAGCG
GAAGAGGCTCTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTGGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGCGAAGATGCATTCAAAGCTGTATATGAAACGTACGGGAAATATAAGAACACATTTGCAAGCACG
TTAAGCGGAGCTGTGAAACGTAATAATTTCAATGCGCGTGTTCGTAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGACTTGATGAGCTTCATATGTATGATATATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTATTAAAGTCTTTAAACGTACTTGGTGATGAGTATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAGCGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATATACACTTGCTCATGAGTTCGGTCATTCC
GTGCATAGTTACTATACAAGAAAGACGCAGCCGCACGTATACGGTGATTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCACTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAAGGACATGCGGTTACGCCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATCGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTTTATCTAAACAAATTTTAGAAGAGGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTATCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCGCTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCACTATTATTTGAAGAGAATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488