Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q9312_RS05540 Genome accession   NZ_CP133548
Coordinates   1255752..1257107 (+) Length   451 a.a.
NCBI ID   WP_309203590.1    Uniprot ID   A0AA51X7Y7
Organism   Pleionea litopenaei strain HL-JVS1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1250752..1262107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9312_RS05520 (Q9312_05520) - 1251746..1252534 (+) 789 WP_309203587.1 outer membrane protein assembly factor BamD -
  Q9312_RS05525 (Q9312_05525) - 1252635..1252973 (-) 339 WP_309203588.1 P-II family nitrogen regulator -
  Q9312_RS05530 (Q9312_05530) nadE 1253045..1253890 (-) 846 WP_353961553.1 ammonia-dependent NAD(+) synthetase -
  Q9312_RS05535 (Q9312_05535) - 1254164..1255750 (+) 1587 WP_309203589.1 ATP-binding protein -
  Q9312_RS05540 (Q9312_05540) pilR 1255752..1257107 (+) 1356 WP_309203590.1 sigma-54 dependent transcriptional regulator Regulator
  Q9312_RS05545 (Q9312_05545) - 1257684..1258262 (-) 579 WP_309203591.1 hypothetical protein -
  Q9312_RS05550 (Q9312_05550) - 1258301..1258630 (-) 330 WP_309203592.1 hypothetical protein -
  Q9312_RS05555 (Q9312_05555) - 1258708..1259013 (-) 306 WP_309203593.1 energy transducer TonB -
  Q9312_RS05560 (Q9312_05560) - 1259089..1259724 (-) 636 WP_309203594.1 hypothetical protein -
  Q9312_RS05565 (Q9312_05565) - 1259727..1260197 (-) 471 WP_309203595.1 hypothetical protein -
  Q9312_RS05570 (Q9312_05570) - 1260283..1260642 (-) 360 WP_309203596.1 hypothetical protein -
  Q9312_RS05575 (Q9312_05575) - 1260707..1260994 (-) 288 WP_309203597.1 hypothetical protein -
  Q9312_RS05580 (Q9312_05580) - 1261088..1261474 (-) 387 WP_309203598.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 50052.23 Da        Isoelectric Point: 5.8607

>NTDB_id=874795 Q9312_RS05540 WP_309203590.1 1255752..1257107(+) (pilR) [Pleionea litopenaei strain HL-JVS1]
MNNNKVLIIDDEPDLLKLLSITLNRMGIECDTAHNVASAKTKIDQNDYRLCLTDMRLPDGNGLTLVDYFIERQPDSPIAV
ITAHGNMETAIEAMKRGAFDFISKPVDLANLRAVINSALNVSTVQSHSDSKANPGLSRLIGQTPEVESLKQIILKVAKSQ
APVYIKGESGTGKELVANLIHENSPRKSQPFIAINCGAIPNELMESEFFGHKKGSFTGASSDKEGLFKAADGGTLFLDEI
ADLPMPMQVKLLRAIQERSVRPVGSEVEIPVDVRLLSASHKNLAKLVSENLFRQDLFYRINVIEVQVPALRDRSKDIPEL
VSHFIKQLSNRNDIEPPKIDPKVLETLESYSFPGNIRELENIIERAITLSSGEMITVDDIFLHSAAKAQSHDTVQSQRKS
QSLDEYLETIERQELLSALEQTKGNKTAAAELLGISFRAMRYKCKKHLIDD

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=874795 Q9312_RS05540 WP_309203590.1 1255752..1257107(+) (pilR) [Pleionea litopenaei strain HL-JVS1]
ATGAATAACAACAAAGTCTTAATTATTGACGATGAACCCGATTTATTAAAACTTCTCAGCATCACTCTCAACCGGATGGG
TATCGAGTGTGATACAGCACATAATGTTGCCTCAGCAAAAACAAAAATCGACCAAAATGATTATCGCCTCTGCCTAACTG
ATATGCGGCTTCCCGATGGCAATGGCTTAACACTGGTGGATTACTTTATTGAACGACAGCCAGACTCTCCGATTGCCGTT
ATTACAGCTCACGGAAATATGGAAACTGCAATTGAAGCCATGAAGCGTGGCGCGTTCGACTTTATTTCGAAACCGGTCGA
CTTGGCAAATCTTAGGGCGGTCATTAACAGTGCTTTAAATGTCTCAACGGTTCAAAGCCATTCCGACTCGAAGGCTAACC
CAGGTTTATCACGATTAATTGGACAAACTCCCGAAGTTGAATCTCTCAAACAAATTATCCTTAAAGTTGCCAAGAGCCAA
GCGCCTGTTTATATCAAAGGCGAGTCTGGTACCGGTAAAGAGTTAGTCGCGAATTTAATTCATGAAAATAGCCCAAGAAA
GAGTCAACCATTCATTGCGATAAACTGTGGAGCCATACCCAATGAATTAATGGAAAGCGAGTTCTTTGGTCACAAGAAAG
GAAGCTTCACAGGTGCTTCCAGTGACAAAGAAGGCTTATTCAAAGCGGCCGATGGTGGTACTTTGTTCTTAGATGAAATC
GCTGACTTGCCTATGCCAATGCAGGTTAAATTATTGCGCGCGATTCAAGAAAGAAGCGTTCGACCAGTCGGCTCTGAAGT
AGAGATACCCGTCGATGTTCGTTTGCTGTCGGCCTCTCACAAAAATCTAGCAAAGCTAGTTTCTGAGAACTTATTTCGCC
AAGACTTGTTTTATCGAATCAATGTTATCGAGGTGCAGGTTCCAGCATTAAGAGATCGCTCTAAAGATATTCCTGAGTTG
GTGTCACATTTCATTAAGCAGCTTTCAAATAGAAATGATATAGAGCCACCGAAAATAGATCCTAAAGTACTAGAGACTTT
AGAAAGCTACAGCTTCCCGGGAAATATCAGAGAACTAGAAAACATCATTGAGCGAGCGATTACCTTATCGAGCGGTGAAA
TGATCACCGTTGACGATATCTTTCTACACTCAGCGGCAAAAGCGCAAAGTCACGATACAGTGCAAAGCCAAAGAAAAAGT
CAATCATTAGATGAGTATTTAGAAACCATAGAACGCCAAGAACTACTGAGTGCTCTTGAACAAACAAAGGGGAACAAAAC
CGCTGCCGCAGAGTTGTTGGGAATAAGCTTCAGAGCGATGCGTTATAAGTGCAAGAAACACCTTATCGATGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(139-306)

Bacterial regulatory protein, Fis family (HTH_8)

(407-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

53.556

99.778

0.534
  pilR Acinetobacter baumannii strain A118

50.644

100

0.523