Detailed information NTG0874709

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: WJ038_RS04390
• Genome accession: NZ_CP149505
• Coordinates: 927611..928891 (+)
• Length: 426 a.a.
• NCBI ID: WP_029804642.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain EB101
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 922611..933891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJ038_RS04370 (WJ038_04365)	-	923175..924977 (-)	1803	WP_029804640.1	ATP-binding protein	-
WJ038_RS04375 (WJ038_04370)	-	925024..925209 (+)	186	WP_005482581.1	hypothetical protein	-
WJ038_RS04380 (WJ038_04375)	tig	925503..926807 (+)	1305	WP_005460612.1	trigger factor	-
WJ038_RS04385 (WJ038_04380)	clpP	926913..927539 (+)	627	WP_005460620.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
WJ038_RS04390 (WJ038_04385)	clpX	927611..928891 (+)	1281	WP_029804642.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
WJ038_RS04395 (WJ038_04390)	lon	929023..931374 (+)	2352	WP_015296438.1	endopeptidase La	-
WJ038_RS04400 (WJ038_04395)	-	931567..931839 (+)	273	WP_005382341.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46707.26 Da
• Isoelectric Point: 4.5914

>NTDB_id=874709 WJ038_RS04390 WP_029804642.1 927611..928891(+) (clpX) [Vibrio parahaemolyticus strain EB101]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKKESEALPTPKQIREHLDDYVI
GQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRIATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTTTLTELD
EEALIQILCEPKNALTKQYAALFELENAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELPSATDVSKVVI
DESVINGESEPLLIYSNADNQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=874709 WJ038_RS04390 WP_029804642.1 927611..928891(+) (clpX) [Vibrio parahaemolyticus strain EB101]
ATGACAGATAAAAGCAAAGAAAGTGGCAGCGGTAAATTGCTGTACTGTTCTTTCTGCGGCAAAAGTCAGCACGAAGTTCG
CAAGCTAATCGCAGGTCCGTCAGTTTACATTTGCGACGAGTGTGTCGACCTATGTAACGATATTATTCGCGAAGAAATCA
AGGATGTTCTCCCTAAGAAAGAATCTGAAGCGTTACCAACGCCAAAACAGATCCGTGAACACCTTGACGACTATGTGATC
GGACAAGATTACGCGAAAAAAGTGCTCGCAGTTGCGGTATATAACCACTACAAGCGTTTACGCAATGGTGATACAACGAG
CGAAGGTGTGGAGCTTGGTAAAAGTAACATCCTTCTAATTGGTCCTACAGGTAGTGGTAAAACGCTGCTTGCTGAGACGC
TAGCTCGATTCTTGGATGTGCCATTCACAATGGCAGACGCAACCACACTAACCGAAGCTGGTTATGTGGGTGAAGACGTT
GAAAACATCATCCAAAAGCTTCTGCAAAAATGTGATTACGATGTAGCGAAAGCTGAACGCGGCATTGTTTACATTGACGA
AATTGACAAAATTTCACGCAAAGCTGAAAACCCATCAATTACGCGTGACGTATCTGGTGAAGGTGTTCAGCAAGCGCTAT
TGAAACTTATCGAAGGTACGGTTGCTTCAGTTCCACCTCAAGGTGGTCGTAAGCATCCACAGCAAGAATTCCTACAAGTG
GACACGTCTAAGATTCTGTTCATCTGTGGTGGTGCATTTGCTGGTTTAGATAAAGTTATCGAACAGCGTATAGCTACGGG
TACTGGTATCGGCTTTGGTGCAGAAGTGCGCTCGAAGAACGAAACCAAAACCGTCGGCGAACTGTTTACTCAGGTTGAGC
CAGAAGATCTAGTGAAGTATGGTTTGATTCCAGAATTCATTGGTCGTCTTCCTGTGACAACAACACTGACAGAGCTTGAT
GAAGAAGCGTTGATTCAGATCCTATGTGAACCGAAAAACGCACTGACCAAGCAGTATGCAGCATTGTTTGAGCTAGAAAA
CGCAGAGCTTGAATTCCGTGAAGATGCCCTTCGTGCTATCGCGAAGAAAGCAATGGAACGTAAGACAGGTGCTCGTGGTT
TGCGTTCAATTCTGGAAAGTGTTCTGCTTGAAACCATGTACGAACTGCCATCTGCGACAGATGTAAGTAAAGTCGTGATT
GATGAATCCGTCATCAATGGTGAGTCAGAACCACTGCTTATTTACAGCAATGCCGACAATCAGGCAGCTGGAGCAGAATA
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.853	94.131	0.554
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.321	95.07	0.516