Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   RDV59_RS00280 Genome accession   NZ_CP133476
Coordinates   47839..48795 (-) Length   318 a.a.
NCBI ID   WP_038676858.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 42839..53795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS00250 (RDV59_00250) proC 43381..44151 (+) 771 WP_002887008.1 pyrroline-5-carboxylate reductase -
  RDV59_RS00255 (RDV59_00255) - 44178..44840 (-) 663 WP_002887009.1 CPBP family intramembrane glutamic endopeptidase -
  RDV59_RS00260 (RDV59_00260) - 44953..45399 (-) 447 WP_037605837.1 hypothetical protein -
  RDV59_RS00265 (RDV59_00265) - 45473..46129 (-) 657 WP_002887011.1 CPBP family intramembrane glutamic endopeptidase -
  RDV59_RS00270 (RDV59_00270) - 46141..46338 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  RDV59_RS00275 (RDV59_00275) - 46589..47782 (-) 1194 WP_002885831.1 acetate kinase -
  RDV59_RS00280 (RDV59_00280) comYH 47839..48795 (-) 957 WP_038676858.1 class I SAM-dependent methyltransferase Machinery gene
  RDV59_RS00285 (RDV59_00285) comGG 48840..49157 (-) 318 WP_002887013.1 competence type IV pilus minor pilin ComGG -
  RDV59_RS00290 (RDV59_00290) comYF 49135..49572 (-) 438 WP_002887014.1 competence type IV pilus minor pilin ComGF Machinery gene
  RDV59_RS00295 (RDV59_00295) comGE 49559..49789 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  RDV59_RS00300 (RDV59_00300) comYD 49821..50249 (-) 429 WP_254593949.1 competence type IV pilus minor pilin ComGD Machinery gene
  RDV59_RS00305 (RDV59_00305) comYC 50209..50523 (-) 315 WP_170314557.1 competence type IV pilus major pilin ComGC Machinery gene
  RDV59_RS00310 (RDV59_00310) comYB 50532..51632 (-) 1101 WP_126405090.1 competence type IV pilus assembly protein ComGB Machinery gene
  RDV59_RS00315 (RDV59_00315) comGA/cglA/cilD 51514..52455 (-) 942 WP_038676863.1 competence type IV pilus ATPase ComGA Machinery gene
  RDV59_RS00320 (RDV59_00320) - 52535..52897 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35769.66 Da        Isoelectric Point: 4.3808

>NTDB_id=874630 RDV59_RS00280 WP_038676858.1 47839..48795(-) (comYH) [Streptococcus salivarius strain LMG 11489]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKRNMKSIFVLKKQTENAPETFVYPLSDLQNSEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=874630 RDV59_RS00280 WP_038676858.1 47839..48795(-) (comYH) [Streptococcus salivarius strain LMG 11489]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCTGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCGAGT
GCAGTTTACATTCAAGAAGATGCTGTTCGACCACATATTCTCAAAGAGAGTGATGTTATTATTAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAAATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGACTTGCTTAAGAAATGGCTATCAGGCTATGCTGATATTATTGCTGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACGTAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGCG
ATTTGCAAAACTCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.159

99.057

0.695
  comYH Streptococcus mutans UA140

70.159

99.057

0.695