Detailed information NTG0874624

Bioinformatically predicted

Overview

• Name: oppD
• Type: Regulator
• Locus tag: RDV58_RS09820
• Genome accession: NZ_CP133475
• Coordinates: 1980971..1982023 (-)
• Length: 350 a.a.
• NCBI ID: WP_002268461.1
• Uniprot ID: A0AAX1K1R1
• Organism: Streptococcus mutans strain LMG 14558
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1975971..1987023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV58_RS09800 (RDV58_09785)	ptcA	1976366..1977385 (-)	1020	WP_002282737.1	putrescine carbamoyltransferase	-
RDV58_RS09805 (RDV58_09790)	-	1977624..1978589 (+)	966	WP_002263993.1	LuxR C-terminal-related transcriptional regulator	-
RDV58_RS09810 (RDV58_09795)	-	1978806..1979408 (-)	603	WP_002269742.1	nitroreductase family protein	-
RDV58_RS09815 (RDV58_09800)	amiF	1980052..1980978 (-)	927	WP_002280001.1	ABC transporter ATP-binding protein	Regulator
RDV58_RS09820 (RDV58_09805)	oppD	1980971..1982023 (-)	1053	WP_002268461.1	ABC transporter ATP-binding protein	Regulator
RDV58_RS09825 (RDV58_09810)	-	1982033..1983064 (-)	1032	WP_002280002.1	ABC transporter permease	-
RDV58_RS09830 (RDV58_09815)	-	1983075..1983989 (-)	915	WP_002262739.1	ABC transporter permease	-
RDV58_RS09835 (RDV58_09820)	-	1984095..1985744 (-)	1650	WP_002280003.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 39204.71 Da
• Isoelectric Point: 5.5768

>NTDB_id=874624 RDV58_RS09820 WP_002268461.1 1980971..1982023(-) (oppD) [Streptococcus mutans strain LMG 14558]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWEKWKSLQGEKHND

Nucleotide

• Length: 1053 bp

>NTDB_id=874624 RDV58_RS09820 WP_002268461.1 1980971..1982023(-) (oppD) [Streptococcus mutans strain LMG 14558]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACACTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTAACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGAAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (235-297)

• ABC transporter (ABC_tran) (27-183)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
oppD	Streptococcus mutans UA159	99.429	100	0.994
amiE	Streptococcus salivarius strain HSISS4	55.014	99.714	0.549
amiE	Streptococcus thermophilus LMG 18311	54.728	99.714	0.546
amiE	Streptococcus thermophilus LMD-9	54.728	99.714	0.546