Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RDV58_RS09815 Genome accession   NZ_CP133475
Coordinates   1980052..1980978 (-) Length   308 a.a.
NCBI ID   WP_002280001.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1975052..1985978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS09800 (RDV58_09785) ptcA 1976366..1977385 (-) 1020 WP_002282737.1 putrescine carbamoyltransferase -
  RDV58_RS09805 (RDV58_09790) - 1977624..1978589 (+) 966 WP_002263993.1 LuxR C-terminal-related transcriptional regulator -
  RDV58_RS09810 (RDV58_09795) - 1978806..1979408 (-) 603 WP_002269742.1 nitroreductase family protein -
  RDV58_RS09815 (RDV58_09800) amiF 1980052..1980978 (-) 927 WP_002280001.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS09820 (RDV58_09805) oppD 1980971..1982023 (-) 1053 WP_002268461.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS09825 (RDV58_09810) - 1982033..1983064 (-) 1032 WP_002280002.1 ABC transporter permease -
  RDV58_RS09830 (RDV58_09815) - 1983075..1983989 (-) 915 WP_002262739.1 ABC transporter permease -
  RDV58_RS09835 (RDV58_09820) - 1984095..1985744 (-) 1650 WP_002280003.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34858.97 Da        Isoelectric Point: 7.3331

>NTDB_id=874623 RDV58_RS09815 WP_002280001.1 1980052..1980978(-) (amiF) [Streptococcus mutans strain LMG 14558]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLSTEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=874623 RDV58_RS09815 WP_002280001.1 1980052..1980978(-) (amiF) [Streptococcus mutans strain LMG 14558]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTCGAAGGTGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGAGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTATCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552