Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   RDV58_RS06685 Genome accession   NZ_CP133475
Coordinates   1331232..1332464 (-) Length   410 a.a.
NCBI ID   WP_002262816.1    Uniprot ID   A0AAX1K4W9
Organism   Streptococcus mutans strain LMG 14558     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326232..1337464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS06665 (RDV58_06655) - 1326561..1327823 (+) 1263 WP_002280024.1 PLP-dependent aminotransferase family protein -
  RDV58_RS06670 (RDV58_06660) mmuM 1327957..1328907 (-) 951 WP_002264316.1 homocysteine S-methyltransferase -
  RDV58_RS06675 (RDV58_06665) - 1328917..1330294 (-) 1378 Protein_1267 amino acid permease -
  RDV58_RS06680 (RDV58_06670) yihA 1330623..1331216 (-) 594 WP_002262817.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RDV58_RS06685 (RDV58_06675) clpX 1331232..1332464 (-) 1233 WP_002262816.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RDV58_RS06690 (RDV58_06680) - 1332489..1332659 (-) 171 WP_002262815.1 hypothetical protein -
  RDV58_RS06695 (RDV58_06685) - 1332677..1333189 (-) 513 WP_002262814.1 dihydrofolate reductase -
  RDV58_RS06700 (RDV58_06690) pnuC 1333274..1334053 (-) 780 WP_002266473.1 nicotinamide riboside transporter PnuC -
  RDV58_RS06705 (RDV58_06695) - 1334170..1335009 (-) 840 WP_002264319.1 thymidylate synthase -
  RDV58_RS06710 (RDV58_06700) - 1335217..1336392 (+) 1176 WP_002267988.1 hydroxymethylglutaryl-CoA synthase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45181.65 Da        Isoelectric Point: 4.4495

>NTDB_id=874602 RDV58_RS06685 WP_002262816.1 1331232..1332464(-) (clpX) [Streptococcus mutans strain LMG 14558]
MAGNRTNDVTVHCSFCGKNQDEVKKIIAGNGVFICNECVELSQEIIREELAEEVLADLSEVPKPKELLAILDSYVIGQDR
AKRALAVAVYNHYKRISFTESQDDQDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKKIDDQSSYMQEIISEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVKI
LTEPKNALVKQYQTLLSYDGVELEFDQEALQAIAQKAIERKTGARGLRSIIEETMLDLMFEIPSQEDVTCVRITKKAVEG
TDKPILETAS

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=874602 RDV58_RS06685 WP_002262816.1 1331232..1332464(-) (clpX) [Streptococcus mutans strain LMG 14558]
ATGGCTGGAAATAGAACCAATGATGTCACAGTGCATTGTTCATTCTGTGGCAAAAATCAAGATGAAGTTAAAAAAATTAT
TGCAGGTAATGGCGTTTTTATTTGCAATGAATGTGTTGAATTATCACAAGAAATTATCCGTGAAGAACTAGCAGAAGAGG
TATTGGCTGATCTTTCAGAAGTTCCAAAACCAAAAGAATTGTTGGCAATACTAGACAGTTATGTTATCGGTCAGGACCGT
GCCAAACGTGCTTTAGCAGTTGCTGTCTATAATCATTATAAGCGTATCAGTTTTACTGAGAGCCAAGACGACCAAGATGT
TGACTTACAAAAATCAAATATTCTTATGATTGGACCGACAGGTTCTGGAAAAACTTTCTTAGCACAGACTTTGGCTAAGA
GTCTCAATGTGCCCTTTGCTATTGCTGATGCAACAGCCTTGACTGAAGCGGGTTATGTAGGTGAAGATGTTGAAAACATT
TTGCTTAAATTGATTCAGGCAGCTGATTATAATGTTGAACGCGCGGAGCGTGGCATCATTTATGTTGATGAAATTGATAA
GATTGCTAAAAAAGGCGAAAATGTTTCCATCACACGTGATGTATCTGGTGAAGGTGTCCAACAAGCTCTGCTTAAGATTA
TTGAAGGAACAGTAGCTAGTGTGCCACCACAAGGTGGTCGGAAACATCCCCAACAGGAAATGATTCAAATTGATACGAAA
AACATCCTCTTCATAGTTGGTGGCGCTTTTGATGGTATTGAAGATATCGTTAAACAGCGTTTGGGTGAGAAAATTATTGG
CTTTGGTCAAAATAATAAGAAGATTGATGATCAATCTTCTTATATGCAAGAAATTATTTCAGAAGACATTCAAAAATTTG
GTCTTATTCCAGAGTTTATTGGTCGTTTGCCAGTTTTAGCTGCGCTTGAGCAATTAACGGTTGATGATTTGGTTAAGATT
TTGACAGAACCTAAAAATGCTTTAGTTAAACAATATCAGACGCTTTTATCTTATGATGGTGTTGAGCTTGAGTTTGATCA
AGAGGCGCTTCAAGCGATTGCTCAAAAGGCGATTGAACGTAAGACAGGCGCACGCGGTCTTCGCTCTATTATTGAAGAAA
CGATGCTGGATCTGATGTTTGAAATTCCGAGTCAAGAGGATGTCACTTGCGTTCGCATTACTAAGAAAGCGGTAGAAGGG
ACCGACAAACCTATTCTTGAGACAGCTTCCTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-388)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

100

100

1
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.102

97.805

0.578