Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RDV54_RS07105 Genome accession   NZ_CP133471
Coordinates   1494076..1494834 (+) Length   252 a.a.
NCBI ID   WP_000410370.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489076..1499834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS07075 (RDV54_07075) comE 1489683..1490435 (-) 753 WP_000866073.1 competence system response regulator transcription factor ComE Regulator
  RDV54_RS07080 (RDV54_07080) comD 1490432..1491757 (-) 1326 WP_020902616.1 competence system sensor histidine kinase ComD Regulator
  RDV54_RS07085 (RDV54_07085) comC 1491770..1491892 (-) 123 WP_004238992.1 competence-stimulating peptide ComC Regulator
  RDV54_RS07095 (RDV54_07095) rlmH 1492175..1492654 (-) 480 WP_000695934.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RDV54_RS07100 (RDV54_07100) htrA 1492837..1494018 (+) 1182 WP_000681587.1 S1C family serine protease Regulator
  RDV54_RS07105 (RDV54_07105) spo0J 1494076..1494834 (+) 759 WP_000410370.1 ParB/RepB/Spo0J family partition protein Regulator
  RDV54_RS07110 (RDV54_07110) dnaA 1495047..1496408 (+) 1362 WP_000660620.1 chromosomal replication initiator protein DnaA -
  RDV54_RS07115 (RDV54_07115) dnaN 1496567..1497703 (+) 1137 WP_000581174.1 DNA polymerase III subunit beta -
  RDV54_RS07120 (RDV54_07120) - 1497768..1497962 (+) 195 WP_000285186.1 DUF951 domain-containing protein -
  RDV54_RS07125 (RDV54_07125) ychF 1498047..1499162 (+) 1116 WP_001218713.1 redox-regulated ATPase YchF -
  RDV54_RS07130 (RDV54_07130) pth 1499236..1499805 (+) 570 WP_000163936.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29134.45 Da        Isoelectric Point: 6.3016

>NTDB_id=874508 RDV54_RS07105 WP_000410370.1 1494076..1494834(+) (spo0J) [Streptococcus mitis strain LMG 14557]
MEKFEMISITDIQKNPYQPRKEFDGEKLHELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRYIPAVVKQ
LSDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGQLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKLQKNDYFIQNEEEQLKKILGLDVEIKLSKKDSGKIIIAFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=874508 RDV54_RS07105 WP_000410370.1 1494076..1494834(+) (spo0J) [Streptococcus mitis strain LMG 14557]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAGAAAAATCCCTATCAACCTCGAAAAGAATTTGATGGAGAAAA
ACTACATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTAAGGTATATCCCAGCTGTTGTTAAACAG
CTTTCAGATCAAGAGATGATGGTCCAGTCCATCATTGAAAATTTGCAAAGAGAAAATTTAAATCCAATAGAAGAAGCACG
CGCCTATGAATCTCTTGTAGAGAAAGGATTTACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCTTATATCA
GCAACTCTATTCGCTTGCTGTCCTTGCCAGAACAGATCCTTTCAGAAGTAGAAAATGGCCAACTATCACAAGCCCATGCG
CGTTCGCTAGTTGGGTTGAATAAGGAACAACAAGACTATTTCTTTCAACGAATTATAGAAGAAGACATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACTGCAAAAAAATGATTATTTCATACAAAATGAAGAAGAACAGT
TAAAAAAAATACTCGGATTAGATGTAGAAATCAAACTGTCTAAAAAAGATAGTGGAAAAATCATTATTGCTTTCTCAAAC
CAAGAAGAATACAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.802

100

0.5