Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   RDV54_RS06105 Genome accession   NZ_CP133471
Coordinates   1297160..1298419 (-) Length   419 a.a.
NCBI ID   WP_000900673.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1292160..1303419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS06095 (RDV54_06095) bglA 1293816..1295195 (-) 1380 WP_000943500.1 6-phospho-beta-glucosidase -
  RDV54_RS06100 (RDV54_06100) - 1295294..1297147 (-) 1854 WP_000814058.1 proline--tRNA ligase -
  RDV54_RS06105 (RDV54_06105) eeP 1297160..1298419 (-) 1260 WP_000900673.1 RIP metalloprotease RseP Regulator
  RDV54_RS06110 (RDV54_06110) - 1298441..1299244 (-) 804 WP_000189860.1 phosphatidate cytidylyltransferase -
  RDV54_RS06115 (RDV54_06115) - 1299253..1300011 (-) 759 WP_000466726.1 isoprenyl transferase -
  RDV54_RS06120 (RDV54_06120) - 1300358..1300930 (-) 573 WP_001028387.1 nucleotidyltransferase family protein -
  RDV54_RS06125 (RDV54_06125) ruvB 1300911..1301909 (-) 999 WP_004239104.1 Holliday junction branch migration DNA helicase RuvB -
  RDV54_RS06130 (RDV54_06130) - 1302043..1302135 (+) 93 WP_000970293.1 type I toxin-antitoxin system Fst family toxin -
  RDV54_RS06135 (RDV54_06135) - 1302943..1303359 (-) 417 WP_000628389.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 419 a.a.        Molecular weight: 45948.62 Da        Isoelectric Point: 5.7162

>NTDB_id=874495 RDV54_RS06105 WP_000900673.1 1297160..1298419(-) (eeP) [Streptococcus mitis strain LMG 14557]
MLGILTFILVFGIIVVVHEFGHFYFAKKSGILVREFAIGMGPKIFAHIGKDGTAYTIRILPLGGYVRMAGWGDDTTEIKT
GTPVSLTLTDDGKVKRINLSGKKLDQTALPMQVTQFDFEDKLFIKGLVLEEEKTFAVDHDATVVEADGTEVRIAPLDVQY
QNATIWGKLITNFAGPMNNFILGVVVFWILIFMQGGVRDVDTNQFHIMPQGALAKVGVPETAQITKIGSHEVSNWESLIQ
AVESETKDKTAPTLDVTISEKGSDKQVTVTPEESQGRYLLGVQPGIKSDFVSMFVGGFTTAVDSALRILSDLKNLIFQPD
LNKLGGPVAIFKASSDAAKNGIENVLYFLAIISINIGIFNLIPIPALDGGKIVLNILEAIRRKPLKQEIETYVTLAGVVI
MVVLMIAVTWNDIMRLFFR

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=874495 RDV54_RS06105 WP_000900673.1 1297160..1298419(-) (eeP) [Streptococcus mitis strain LMG 14557]
ATGCTCGGAATTTTAACCTTTATTCTGGTTTTTGGGATTATTGTAGTGGTGCACGAGTTCGGACACTTCTACTTTGCCAA
GAAATCAGGGATTCTAGTGCGTGAATTTGCCATTGGCATGGGACCCAAGATCTTTGCTCATATTGGCAAGGATGGAACGG
CCTATACCATTCGAATCTTGCCTCTGGGTGGCTATGTTCGCATGGCCGGTTGGGGTGATGATACAACTGAAATTAAGACA
GGAACTCCTGTCAGTTTGACCCTTACTGATGATGGTAAGGTTAAACGCATCAATCTTTCAGGTAAAAAATTAGATCAAAC
AGCCCTCCCTATGCAGGTGACCCAGTTTGATTTTGAAGACAAGCTCTTTATCAAGGGCTTGGTTCTGGAAGAAGAAAAAA
CATTTGCAGTAGATCACGATGCAACGGTTGTGGAAGCAGATGGAACTGAGGTTCGAATTGCTCCTTTGGATGTGCAATAT
CAAAATGCGACTATCTGGGGGAAACTGATTACTAACTTTGCAGGTCCTATGAACAACTTTATCTTAGGTGTCGTTGTTTT
CTGGATTTTAATCTTTATGCAGGGTGGTGTCAGAGATGTCGATACCAACCAGTTCCATATTATGCCTCAAGGGGCTTTGG
CTAAGGTAGGAGTACCAGAAACGGCACAGATTACCAAGATTGGTTCACATGAGGTTAGCAACTGGGAAAGCTTGATTCAA
GCTGTGGAATCAGAAACCAAAGATAAGACGGCCCCGACCTTGGATGTGACTATTTCTGAAAAGGGGAGTGACAAACAAGT
CACTGTTACTCCGGAAGAAAGTCAAGGCCGTTACCTTCTAGGTGTTCAACCGGGGATTAAGTCAGATTTTGTATCTATGT
TTGTAGGTGGTTTTACAACTGCTGTTGACTCGGCCCTCCGAATTCTATCAGATCTGAAAAATCTGATTTTCCAACCGGAT
TTGAACAAACTAGGTGGACCTGTTGCCATCTTTAAGGCAAGTAGTGATGCTGCTAAAAATGGAATTGAGAATGTCTTGTA
CTTCTTGGCAATTATTTCCATCAATATTGGGATTTTTAATCTTATTCCGATTCCAGCCCTGGATGGTGGTAAGATTGTGC
TCAATATCCTAGAAGCTATCCGCCGCAAACCATTGAAACAAGAAATTGAAACCTATGTCACCTTGGCCGGAGTGGTCATC
ATGGTTGTCTTGATGATTGCTGTGACCTGGAATGACATCATGCGACTCTTTTTTAGATAA

Domains


Predicted by InterproScan.

(6-404)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

63.81

100

0.64

  eeP Streptococcus thermophilus LMG 18311

63.571

100

0.637