Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RDV54_RS06010 Genome accession   NZ_CP133471
Coordinates   1267317..1269086 (-) Length   589 a.a.
NCBI ID   WP_000731780.1    Uniprot ID   A0AAX2L3V4
Organism   Streptococcus mitis strain LMG 14557     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262317..1274086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS05980 (RDV54_05980) - 1262913..1263278 (-) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  RDV54_RS05985 (RDV54_05985) rpmB 1263434..1263622 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  RDV54_RS05990 (RDV54_05990) - 1263729..1264403 (-) 675 WP_000725716.1 LiaF transmembrane domain-containing protein -
  RDV54_RS05995 (RDV54_05995) - 1264408..1264854 (-) 447 WP_000776607.1 LytTR family DNA-binding domain-containing protein -
  RDV54_RS06000 (RDV54_06000) - 1264968..1265471 (-) 504 WP_000800907.1 phosphatase PAP2 family protein -
  RDV54_RS06005 (RDV54_06005) rcrQ 1265567..1267327 (-) 1761 WP_078228271.1 ABC transporter ATP-binding protein Regulator
  RDV54_RS06010 (RDV54_06010) rcrP 1267317..1269086 (-) 1770 WP_000731780.1 ABC transporter ATP-binding protein Regulator
  RDV54_RS06015 (RDV54_06015) - 1269070..1269531 (-) 462 WP_000360529.1 MarR family winged helix-turn-helix transcriptional regulator -
  RDV54_RS06020 (RDV54_06020) - 1269745..1270390 (+) 646 Protein_1169 DUF4190 domain-containing protein -
  RDV54_RS06025 (RDV54_06025) - 1270440..1271156 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RDV54_RS06030 (RDV54_06030) - 1271253..1272623 (-) 1371 WP_001036250.1 MATE family efflux transporter -
  RDV54_RS06035 (RDV54_06035) recA 1272739..1273893 (-) 1155 WP_078228268.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65474.94 Da        Isoelectric Point: 6.1096

>NTDB_id=874491 RDV54_RS06010 WP_000731780.1 1267317..1269086(-) (rcrP) [Streptococcus mitis strain LMG 14557]
MKKLAKRISRKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPAGMMVGMSFFAFLSAVAVGFFAS
RVAASYTSRLRSDIFNRVLDYSQTEIKRFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEEYQNEKFAAANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDAAPIARLPLFSDMIVFMSYAMQVVMGFLLMGALFIVLPRTIVSAKRINQVLDLH
SSIQNPAQVQLADENLKGQVEFKDVTFRYAANSEAVIEHVSFRAETGQTVAFIGSTGSGKSTLVNLIPRFYDVSEGEILV
DGVNVQDYALEDLRNKVGYIPQKAVLFSGDVKGNLDFGQSLETPLSEQAMWQALELAQSKNFIEDKEAGLASEVSQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELVEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=874491 RDV54_RS06010 WP_000731780.1 1267317..1269086(-) (rcrP) [Streptococcus mitis strain LMG 14557]
ATGAAGAAATTAGCTAAACGAATTAGTAGAAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACCTGCTTTTCAGT
CTACCTAGAGTTGGAAGTTCCGACCTATATCTCGAAAATTACGGATTTGCTGGGAAGTCAAGGAACCAACTTGGATGAGT
TATGGCAACCAGCAGGTATGATGGTCGGAATGTCTTTTTTTGCCTTCTTATCCGCAGTCGCAGTTGGATTTTTTGCATCC
CGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATTTTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAA
GAGATTCTCTATTCCCAGTCTTTTAACTCGTACCACCAATGACATTACTCAAGTTCAGATGTTGATTACCATGGGCTTGC
AAGTAGTTACGCGTGGTCCGATTATGGCTATCTGGGCTATCGGGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCC
GTACTTGTGGCAGTGATTGTCAACGTTCTGATGACGACTGTTTTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCA
GGGGCTGACTGATAAACTGAACAGTATCACTCGTGAGAGTTTAACAGGTATTCGCGTCGTTCGCGCCTACAATGCTGAAG
AATACCAAAATGAAAAATTTGCAGCAGCAAATGATGAATTGACACGCTTGAATTTGTTTGTCAACCGTCTTATGGCTATT
TTGAACCCTATCATGATGGGAATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTGATTAACGACGC
TGCTCCGATAGCACGTCTGCCTCTCTTTAGTGATATGATTGTTTTCATGTCTTATGCCATGCAGGTTGTCATGGGCTTCC
TTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATAGTCTCTGCTAAGCGCATTAATCAAGTTTTAGATTTGCAT
TCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGGCTGATGAAAACCTCAAAGGTCAGGTCGAATTTAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCAGTTATCGAGCATGTTAGCTTTAGAGCAGAAACTGGTCAAACAGTGGCCTTTATTG
GGTCAACAGGTTCTGGTAAATCAACTCTAGTCAATCTGATTCCACGTTTCTACGATGTGTCAGAAGGAGAAATTCTGGTG
GACGGTGTCAATGTTCAAGACTATGCTCTAGAAGATTTGCGCAACAAAGTTGGTTATATTCCTCAGAAAGCGGTTCTCTT
TTCAGGTGATGTCAAGGGCAATCTAGACTTTGGACAAAGTCTAGAAACACCGCTTAGTGAGCAGGCTATGTGGCAGGCTT
TGGAGTTGGCCCAGTCTAAGAACTTTATCGAAGACAAGGAAGCGGGCTTAGCGTCAGAAGTGTCCCAAGGAGGAACCAAC
TTCTCAGGTGGTCAAAGACAGCGTCTAGCAATTGCGCGTGCCTTAGCTCGGAAGCCAGAAATCCTCATCTTTGACGACTC
CTTCTCAGCCTTGGACTACAAGACAGACCGTGTCCTACGCCAAGAGTTAGTAGAGAAAACCAAGTCTATGACCAAGCTTA
TTGTCGCACAGCGTATTTCAACGATTATGGATGCAGATTTGATTTTGGTCTTGGATCAAGGAAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTAGCTAATAATGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.89

100

0.672