Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RDV54_RS06005 Genome accession   NZ_CP133471
Coordinates   1265567..1267327 (-) Length   586 a.a.
NCBI ID   WP_078228271.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260567..1272327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS05975 (RDV54_05975) - 1261243..1262910 (-) 1668 WP_000036656.1 DAK2 domain-containing protein -
  RDV54_RS05980 (RDV54_05980) - 1262913..1263278 (-) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  RDV54_RS05985 (RDV54_05985) rpmB 1263434..1263622 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  RDV54_RS05990 (RDV54_05990) - 1263729..1264403 (-) 675 WP_000725716.1 LiaF transmembrane domain-containing protein -
  RDV54_RS05995 (RDV54_05995) - 1264408..1264854 (-) 447 WP_000776607.1 LytTR family DNA-binding domain-containing protein -
  RDV54_RS06000 (RDV54_06000) - 1264968..1265471 (-) 504 WP_000800907.1 phosphatase PAP2 family protein -
  RDV54_RS06005 (RDV54_06005) rcrQ 1265567..1267327 (-) 1761 WP_078228271.1 ABC transporter ATP-binding protein Regulator
  RDV54_RS06010 (RDV54_06010) rcrP 1267317..1269086 (-) 1770 WP_000731780.1 ABC transporter ATP-binding protein Regulator
  RDV54_RS06015 (RDV54_06015) - 1269070..1269531 (-) 462 WP_000360529.1 MarR family winged helix-turn-helix transcriptional regulator -
  RDV54_RS06020 (RDV54_06020) - 1269745..1270390 (+) 646 Protein_1169 DUF4190 domain-containing protein -
  RDV54_RS06025 (RDV54_06025) - 1270440..1271156 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64672.40 Da        Isoelectric Point: 4.9698

>NTDB_id=874490 RDV54_RS06005 WP_078228271.1 1265567..1267327(-) (rcrQ) [Streptococcus mitis strain LMG 14557]
MENKKMSLWKQSKPYLAGLQFALLIAFLATIVSNIITVYGPTRIKEMTNIIASGLETSVDVVAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRRAIAEKINSLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSTLLVVAVLVTM
FGMNWILALVTVVSTLVGFVFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNNRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGHISIGIIVAFMAYVRIFSQPLSQIAQGVTSLQQASAAMGRVFE
FLAEEEMEDESHKERQLSDMKGQVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKDMKRSEVHNAFSMVLQDTWLFEGTIRDNLIYNQTGISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKNGNIIEQGN
HDELMAQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=874490 RDV54_RS06005 WP_078228271.1 1265567..1267327(-) (rcrQ) [Streptococcus mitis strain LMG 14557]
ATGGAAAATAAGAAAATGTCTCTTTGGAAACAGAGCAAACCCTATCTTGCAGGCCTCCAGTTTGCCCTTCTGATAGCCTT
TCTAGCAACAATCGTATCCAATATCATTACTGTATATGGTCCAACCCGCATCAAGGAAATGACTAATATTATTGCTAGTG
GTCTGGAAACAAGTGTGGATGTCGTGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTGATTTATGTGATAGGACTTCTA
TCAAATTATTTACAGGCATTTCTGTTTACAACAGCTATTCAACGTTTTTCAGAGCGTTTGAGAAGAGCTATTGCAGAGAA
AATCAATAGCCTACCATTGGGATATTTTGATGGACATTCTCAAGGAGATACCTTGTCTCGTGTGACCAATGATGTTGATA
CTGCAGCCCAGTCCCTCAATCAAAGTCTGGGAACAGTTCTTTCATCCACTTTACTGGTCGTGGCAGTCTTGGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTTTCAACTCTTGTTGGTTTTGTTTTCGTGTCCGTCTTTATGGG
CAAATCACAGGGCTTTTTTAAGAGTCAGCAACAAGATTTGGCAGCTGTCAATGGCTATGTGGAGGAAATGTACTCTGGCC
ATAATGTGGTGACCAGTTACAATGCTATCGAGAGCACGAAAGAAGAGTTTGCGAAATTAAACAATCGTCTGTATGATAGT
ATCTGGAAATCTCAATTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAATTTTAGCTATGCCTTGGTGAT
TATCGTTGGTGCAGCCTTGGCCTTAAATGGGCACATCAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCCCTTTCACAAATTGCCCAAGGGGTTACTAGTCTTCAGCAGGCTAGTGCAGCCATGGGACGTGTCTTCGAA
TTCCTAGCTGAAGAGGAAATGGAAGACGAATCCCATAAAGAAAGACAATTGAGCGATATGAAAGGTCAAGTAGTCTTTGA
TCGAGTCTCCTTTGGTTATACACCAGAGCGAACCATTATTCATGACTTTTCTGCGACCGCTCATGCAGGTCAAAAGGTTG
CCATTGTCGGACCGACTGGGGCTGGTAAGACAACTATTGTCAATCTTTTGATGAAGTTCTATGAGATTGATAAGGGAAGT
ATCCGTATCGATGGTGTGGATACCAAGGATATGAAGCGTTCGGAAGTACACAATGCCTTTTCAATGGTCTTGCAGGATAC
TTGGCTCTTTGAAGGCACTATCCGAGACAATCTCATTTATAACCAAACAGGTATTAGTGATGAGCGCGTGATTGAAGCTA
GCAAGGCTGTAGGGATTCACCACTTTATTATGACTCTACCAGATGGTTACGATACCGTCTTGGACGACACAGTGACCTTG
TCTGTCGGACAAAAACAACTCTTGACCATCGCTCGTGCTTTGCTGAAAGATGCACCGCTCCTAATCCTAGATGAGGCGAC
TTCTTCTGTTGATACCCGTACAGAGGAATTGATTCAGAAAGCCATGGATCGTTTGATGGAGGGAAGAACTTCCTTTGTCA
TCGCTCACCGCTTGTCTACCATCCGAAATGCTGATTTGATTCTTGTTATGAAGAATGGTAATATCATCGAGCAAGGAAAT
CATGATGAGCTGATGGCGCAAGCTGGTTTCTACGCTGACCTCTACAACAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.61

99.659

0.664