Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RDV54_RS03175 Genome accession   NZ_CP133471
Coordinates   647116..647925 (-) Length   269 a.a.
NCBI ID   WP_000004960.1    Uniprot ID   F9HDX9
Organism   Streptococcus mitis strain LMG 14557     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 642116..652925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS03150 (RDV54_03150) - 643592..645310 (+) 1719 WP_000121686.1 phospho-sugar mutase -
  RDV54_RS03155 (RDV54_03155) - 645422..645769 (+) 348 WP_000434630.1 thiol reductase thioredoxin -
  RDV54_RS03160 (RDV54_03160) - 645807..646484 (-) 678 WP_000566125.1 potassium channel family protein -
  RDV54_RS03165 (RDV54_03165) - 646527..646781 (-) 255 WP_004239453.1 type II toxin-antitoxin system RelE family toxin -
  RDV54_RS03170 (RDV54_03170) relB 646783..647025 (-) 243 WP_000208079.1 type II toxin-antitoxin system RelB family antitoxin -
  RDV54_RS03175 (RDV54_03175) vicX 647116..647925 (-) 810 WP_000004960.1 MBL fold metallo-hydrolase Regulator
  RDV54_RS03180 (RDV54_03180) micB 647918..649276 (-) 1359 WP_000571163.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RDV54_RS03185 (RDV54_03185) micA 649269..649976 (-) 708 WP_000722072.1 response regulator YycF Regulator
  RDV54_RS03190 (RDV54_03190) mutY 650032..651207 (-) 1176 WP_000886130.1 A/G-specific adenine glycosylase -
  RDV54_RS03195 (RDV54_03195) pta 651396..652370 (-) 975 WP_000451571.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29914.87 Da        Isoelectric Point: 6.1738

>NTDB_id=874472 RDV54_RS03175 WP_000004960.1 647116..647925(-) (vicX) [Streptococcus mitis strain LMG 14557]
MSETGFKYSILASGSSGNSFYLETPKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGIDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=874472 RDV54_RS03175 WP_000004960.1 647116..647925(-) (vicX) [Streptococcus mitis strain LMG 14557]
ATGAGTGAAACAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCCTTTTATCTGGAAACGCCAAAAAA
GAAACTTTTAGTGGATGCAGGCTTATCTGGTAAGAAAATCACCAGCCTACTTGCTGAAATAAATCGCAAGCCAGAAGACT
TGGATGCCATTTTGATTACCCATGAGCATTCAGACCATATCCATGGAGTCGGTGTGTTGGCTCGCAAGTATGGTATGGAT
CTTTACGCCAATGAAAAGACCTGGCAGGCTATGGAAAATAGCAAGTATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
CTTTGAAATGGGCAAAACAAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGTCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTTAGTGACCGTATGGCAGGA
ATTGTCGAGAATGCAGATGGCTATCTTATCGAGTCCAACCATGATGTAGAGATTTTGCGAGCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATACTATCGGATCTGGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGTACCTTGGGAA
ACCGCACTAAGAAAATCTACCTTGGTCATTTATCTAAGGAGAACAATATCAAGGAACTGGCTCATATGACCATGGTAAAT
CAGTTGGCTCAAGCTGATCTTGGAGTTGGGATAGACTTTAAGGTATATGATACCTCACCAGATACCGCAACACCATTGAC
AGATATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9HDX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781