Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   RDV53_RS06895 Genome accession   NZ_CP133470
Coordinates   1398278..1398820 (+) Length   180 a.a.
NCBI ID   WP_005695588.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1393278..1403820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS06875 (RDV53_06875) - 1393951..1394847 (-) 897 WP_005695582.1 manganese/iron ABC transporter ATP-binding protein -
  RDV53_RS06880 (RDV53_06880) - 1394847..1395728 (-) 882 WP_005695583.1 metal ABC transporter substrate-binding protein -
  RDV53_RS06885 (RDV53_06885) - 1395883..1396758 (-) 876 WP_005695584.1 D-alanyl-D-alanine carboxypeptidase family protein -
  RDV53_RS06890 (RDV53_06890) - 1397060..1398208 (+) 1149 WP_005695586.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  RDV53_RS06895 (RDV53_06895) pilF/pilF2 1398278..1398820 (+) 543 WP_005695588.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  RDV53_RS06900 (RDV53_06900) - 1398894..1399922 (+) 1029 WP_005695589.1 RodZ family helix-turn-helix domain-containing protein -
  RDV53_RS06905 (RDV53_06905) ispG 1399941..1401047 (+) 1107 WP_005695590.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  RDV53_RS06910 (RDV53_06910) hisS 1401057..1402328 (+) 1272 WP_005695591.1 histidine--tRNA ligase -
  RDV53_RS06915 (RDV53_06915) - 1402347..1402961 (+) 615 WP_005695592.1 YfgM family protein -
  RDV53_RS06920 (RDV53_06920) - 1403013..1403456 (+) 444 WP_005695593.1 isoprenylcysteine carboxylmethyltransferase family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20343.01 Da        Isoelectric Point: 6.4774

>NTDB_id=874451 RDV53_RS06895 WP_005695588.1 1398278..1398820(+) (pilF/pilF2) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MKLIPINILSAVIFPFVFSACVSQSSVDFNKQQAAKARVELALGYLQQNDFVQAKLNLDKALEHDERYYLVHSALAHFYQ
LQGDPEKAKQAYLQAIKLDDKQGDVYNNFGAFLCGQGEFEQAYSQFNAALAAPNYYHQADTYENMALCAFAGKQTDVYQQ
ALDKLRQVDPSRAEKLRSLK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=874451 RDV53_RS06895 WP_005695588.1 1398278..1398820(+) (pilF/pilF2) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGAAATTAATCCCAATTAACATTCTAAGTGCGGTCATTTTTCCTTTTGTTTTTTCTGCTTGTGTCTCTCAGTCTTCCGT
TGACTTTAATAAACAACAAGCAGCAAAAGCGCGAGTTGAACTGGCATTAGGCTATCTTCAACAAAATGATTTTGTTCAAG
CAAAACTCAATTTAGATAAAGCCCTTGAGCATGATGAACGATATTATCTTGTGCACTCAGCACTTGCACATTTTTATCAA
TTACAAGGCGATCCGGAAAAAGCGAAGCAAGCTTATTTACAGGCGATTAAGTTAGATGATAAGCAAGGCGATGTGTATAA
CAACTTCGGTGCTTTTTTATGTGGGCAAGGTGAGTTTGAACAAGCTTATTCACAATTTAATGCGGCACTCGCTGCGCCGA
ATTATTACCATCAAGCCGATACTTACGAAAACATGGCGCTTTGTGCTTTCGCCGGAAAACAAACCGATGTTTATCAACAG
GCATTGGATAAATTGCGTCAAGTTGATCCTTCTAGAGCGGAAAAGCTCCGTTCACTCAAATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_2)

(71-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

66.279

95.556

0.633
  pilF Glaesserella parasuis strain SC1401

49.718

98.333

0.489