Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   WJ062_RS06750 Genome accession   NZ_CP149486
Coordinates   1377371..1378405 (-) Length   344 a.a.
NCBI ID   WP_002988663.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain EMM113     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372371..1383405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ062_RS06715 (WJ062_06685) - 1373147..1373449 (-) 303 WP_111689225.1 YlxQ-related RNA-binding protein -
  WJ062_RS06720 (WJ062_06690) rnpM 1373442..1373738 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  WJ062_RS06725 (WJ062_06695) nusA 1373754..1374911 (-) 1158 WP_002988817.1 transcription termination factor NusA -
  WJ062_RS06730 (WJ062_06700) rimP 1375086..1375622 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  WJ062_RS06740 (WJ062_06710) trmB 1375881..1376516 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  WJ062_RS06745 (WJ062_06715) ccrZ 1376516..1377307 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  WJ062_RS06750 (WJ062_06720) pptB 1377371..1378405 (-) 1035 WP_002988663.1 ABC transporter permease Regulator
  WJ062_RS06755 (WJ062_06725) pptA 1378408..1379133 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  WJ062_RS06760 (WJ062_06730) - 1379205..1379624 (+) 420 WP_002983376.1 HIT family protein -
  WJ062_RS06765 (WJ062_06735) - 1379621..1379977 (+) 357 WP_047235695.1 hypothetical protein -
  WJ062_RS06770 (WJ062_06740) brpA 1380088..1381371 (-) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  WJ062_RS06775 (WJ062_06745) - 1381380..1381904 (-) 525 WP_002983369.1 GNAT family N-acetyltransferase -
  WJ062_RS06780 (WJ062_06750) tsaE 1381879..1382340 (-) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40241.47 Da        Isoelectric Point: 10.4168

>NTDB_id=874443 WJ062_RS06750 WP_002988663.1 1377371..1378405(-) (pptB) [Streptococcus pyogenes strain EMM113]
MKALFLKRRQNFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=874443 WJ062_RS06750 WP_002988663.1 1377371..1378405(-) (pptB) [Streptococcus pyogenes strain EMM113]
ATGAAAGCATTATTTCTGAAACGCCGTCAAAACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427