Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   RDV53_RS05365 Genome accession   NZ_CP133470
Coordinates   1087794..1088156 (+) Length   120 a.a.
NCBI ID   WP_032822529.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1082794..1093156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS05335 (RDV53_05335) glmU 1083225..1084595 (+) 1371 WP_005695244.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  RDV53_RS05340 (RDV53_05340) lspA 1084712..1085203 (+) 492 WP_005695245.1 signal peptidase II -
  RDV53_RS05345 (RDV53_05345) ispH 1085200..1086144 (+) 945 WP_005695246.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RDV53_RS05350 (RDV53_05350) - 1086191..1086562 (-) 372 WP_005695249.1 DUF305 domain-containing protein -
  RDV53_RS05355 (RDV53_05355) rdgB 1086694..1087293 (+) 600 WP_032822530.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  RDV53_RS05360 (RDV53_05360) - 1087332..1087649 (+) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  RDV53_RS05365 (RDV53_05365) comE1/comEA 1087794..1088156 (+) 363 WP_032822529.1 helix-hairpin-helix domain-containing protein Machinery gene
  RDV53_RS05370 (RDV53_05370) focA 1088370..1089224 (+) 855 WP_005695253.1 formate transporter FocA -
  RDV53_RS05375 (RDV53_05375) pflB 1089280..1091592 (+) 2313 WP_005695254.1 formate C-acetyltransferase -
  RDV53_RS05380 (RDV53_05380) - 1091989..1092654 (+) 666 WP_147286810.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13101.00 Da        Isoelectric Point: 9.6909

>NTDB_id=874443 RDV53_RS05365 WP_032822529.1 1087794..1088156(+) (comE1/comEA) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MKLMKQLFSSLFIAGAMLSTQALAEEKTAEQAQPQTQVQQQTAVQAPSQTVQQTVSDKLNINTASASEIQKALIGIGAKK
AEAIVQYREKHGNFTVAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=874443 RDV53_RS05365 WP_032822529.1 1087794..1088156(+) (comE1/comEA) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGAAATTGATGAAACAGTTATTTAGTTCATTGTTTATTGCAGGCGCGATGTTGAGCACACAAGCGCTTGCAGAAGAAAA
AACAGCTGAGCAGGCTCAACCGCAAACGCAAGTGCAGCAACAAACTGCTGTACAAGCACCATCACAAACTGTACAACAAA
CGGTGAGTGATAAATTAAATATCAATACCGCTAGTGCATCAGAAATTCAAAAAGCACTGATTGGTATTGGGGCGAAAAAA
GCAGAAGCCATTGTACAATATCGTGAAAAACACGGTAATTTCACTGTGGCAGAACAACTACTTGAAGTACAAGGTATTGG
CAAAGCCACACTAGAGAAAAACCGAGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

64.957

97.5

0.633
  comEA/comE1 Glaesserella parasuis strain SC1401

52.542

98.333

0.517