Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   RDV50_RS09640 Genome accession   NZ_CP133462
Coordinates   2002362..2002907 (-) Length   181 a.a.
NCBI ID   WP_137040873.1    Uniprot ID   A0A4D7WGV0
Organism   Neisseria subflava strain LMG 5313     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997362..2007907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS09610 (RDV50_09610) - 1997395..1998531 (-) 1137 WP_137040879.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RDV50_RS09615 (RDV50_09615) - 1998528..1999073 (-) 546 WP_137040878.1 DUF1643 domain-containing protein -
  RDV50_RS09620 (RDV50_09620) trpE 1999070..2000545 (-) 1476 WP_137040877.1 anthranilate synthase component I -
  RDV50_RS09625 (RDV50_09625) - 2000681..2001058 (-) 378 WP_137040876.1 hypothetical protein -
  RDV50_RS09630 (RDV50_09630) - 2001195..2001815 (+) 621 WP_137040875.1 Smr/MutS family protein -
  RDV50_RS09635 (RDV50_09635) - 2001869..2002357 (-) 489 WP_137040874.1 PilX family type IV pilin -
  RDV50_RS09640 (RDV50_09640) pilK 2002362..2002907 (-) 546 WP_137040873.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RDV50_RS09645 (RDV50_09645) pilJ 2002886..2003821 (-) 936 WP_308862660.1 pilus assembly protein PilW Machinery gene
  RDV50_RS09650 (RDV50_09650) pilV 2003824..2004474 (-) 651 WP_208648089.1 type IV pilus modification protein PilV -
  RDV50_RS09655 (RDV50_09655) pilH 2004490..2005185 (-) 696 WP_137040872.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RDV50_RS09660 (RDV50_09660) dnaB 2005343..2006749 (-) 1407 WP_063075500.1 replicative DNA helicase -
  RDV50_RS09665 (RDV50_09665) - 2006904..2007485 (+) 582 WP_070460856.1 superoxide dismutase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20166.02 Da        Isoelectric Point: 8.4501

>NTDB_id=874404 RDV50_RS09640 WP_137040873.1 2002362..2002907(-) (pilK) [Neisseria subflava strain LMG 5313]
MRRPITLIKPDRQQGYALFIVLMMMVVIALLVVTATQSYNTEQRISTNDADRKLATTLAEAALREGENQIFDIEGKKTTF
TAECTKGLCSTPNVKSNGDFTEEGNPTVDAWKRKCDKSLCIDANGTEYPLDKKSGIVNNPRYIIEYLGKTTEGRITYRVT
AKAWGKNANTQVVLQSYVASE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=874404 RDV50_RS09640 WP_137040873.1 2002362..2002907(-) (pilK) [Neisseria subflava strain LMG 5313]
ATGCGCCGACCGATCACTCTAATCAAACCTGACCGGCAGCAGGGCTATGCTTTGTTTATCGTCTTAATGATGATGGTCGT
CATCGCCCTGCTCGTGGTTACAGCCACCCAGTCCTACAATACCGAACAGCGTATCAGTACCAATGATGCCGACCGTAAAC
TGGCAACCACCCTAGCCGAAGCGGCACTGCGTGAAGGTGAAAATCAAATTTTTGATATTGAAGGTAAAAAGACTACTTTT
ACTGCAGAATGTACAAAAGGTTTATGTTCCACACCAAACGTAAAATCCAATGGCGATTTTACTGAAGAAGGCAACCCAAC
CGTAGATGCTTGGAAGCGCAAATGCGACAAAAGCCTGTGTATTGACGCCAATGGTACGGAATATCCTTTAGATAAAAAAA
GTGGCATCGTAAATAATCCACGCTACATCATCGAATATTTAGGTAAAACGACAGAGGGTCGAATTACTTACCGCGTTACC
GCCAAAGCATGGGGTAAGAATGCCAATACCCAAGTCGTTCTTCAGTCTTACGTTGCCAGCGAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(14-64)

Type IV pilus assembly protein PilX C-term (PilX)

(101-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WGV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

55.941

100

0.624