Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RDV50_RS09655 Genome accession   NZ_CP133462
Coordinates   2004490..2005185 (-) Length   231 a.a.
NCBI ID   WP_137040872.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1999490..2010185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS09625 (RDV50_09625) - 2000681..2001058 (-) 378 WP_137040876.1 hypothetical protein -
  RDV50_RS09630 (RDV50_09630) - 2001195..2001815 (+) 621 WP_137040875.1 Smr/MutS family protein -
  RDV50_RS09635 (RDV50_09635) - 2001869..2002357 (-) 489 WP_137040874.1 PilX family type IV pilin -
  RDV50_RS09640 (RDV50_09640) pilK 2002362..2002907 (-) 546 WP_137040873.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RDV50_RS09645 (RDV50_09645) pilJ 2002886..2003821 (-) 936 WP_308862660.1 pilus assembly protein PilW Machinery gene
  RDV50_RS09650 (RDV50_09650) pilV 2003824..2004474 (-) 651 WP_208648089.1 type IV pilus modification protein PilV -
  RDV50_RS09655 (RDV50_09655) pilH 2004490..2005185 (-) 696 WP_137040872.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RDV50_RS09660 (RDV50_09660) dnaB 2005343..2006749 (-) 1407 WP_063075500.1 replicative DNA helicase -
  RDV50_RS09665 (RDV50_09665) - 2006904..2007485 (+) 582 WP_070460856.1 superoxide dismutase -
  RDV50_RS09670 (RDV50_09670) - 2007711..2009252 (+) 1542 WP_137040871.1 OFA family MFS transporter -
  RDV50_RS09675 (RDV50_09675) - 2009311..2010156 (-) 846 WP_137040870.1 DUF817 domain-containing protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25975.44 Da        Isoelectric Point: 6.8497

>NTDB_id=874406 RDV50_RS09655 WP_137040872.1 2004490..2005185(-) (pilH) [Neisseria subflava strain LMG 5313]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPAKIKSDGSHNG
CIHKKNSTSTSIGMLAYADKNENSSYQNDEDDLSIRYIILNGDTEKVEYRFDYIPSGTSLSALSSSDPKEVWWKFLPNGT
FEYLIDDKDGDKDKKNYQFSDGHIKISLTDKFATDAETKKARATVLLINGNGHVEICAKNDERKMCEYTSK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=874406 RDV50_RS09655 WP_137040872.1 2004490..2005185(-) (pilH) [Neisseria subflava strain LMG 5313]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCTGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CGCGTAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGCCAAAATCAAATCCGATGGCTCGCATAATGGT
TGCATTCACAAAAAAAACAGTACCAGTACCAGTATTGGTATGTTGGCCTACGCCGATAAAAACGAAAATTCCAGCTATCA
AAATGATGAAGACGATTTATCTATCCGCTACATCATTCTCAATGGCGACACTGAAAAAGTGGAATACCGCTTCGACTATA
TTCCCAGCGGTACTTCACTTTCCGCCCTCTCCTCTTCCGATCCAAAAGAAGTCTGGTGGAAATTCCTGCCCAATGGTACA
TTTGAATATTTAATCGATGATAAGGATGGTGATAAGGATAAGAAAAATTATCAATTTTCAGACGGTCACATCAAAATCAG
CCTGACGGATAAATTTGCCACCGATGCTGAAACCAAAAAAGCCCGTGCTACCGTACTTTTAATCAATGGCAATGGGCATG
TCGAAATCTGTGCTAAAAACGATGAGCGCAAAATGTGCGAATACACTTCCAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type II transport protein GspH (GspH)

(43-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

50.655

99.134

0.502