Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   RDV50_RS07990 Genome accession   NZ_CP133462
Coordinates   1651234..1651521 (+) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria subflava strain LMG 5313     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1646234..1656521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS07985 (RDV50_07985) - 1650124..1650954 (-) 831 WP_137041108.1 integrase core domain-containing protein -
  RDV50_RS07990 (RDV50_07990) comE 1651234..1651521 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  RDV50_RS07995 (RDV50_07995) hpnD 1651958..1652806 (+) 849 WP_137041107.1 presqualene diphosphate synthase HpnD -
  RDV50_RS08000 (RDV50_08000) hpnE 1652803..1654110 (+) 1308 WP_137041106.1 hydroxysqualene dehydroxylase HpnE -
  RDV50_RS08005 (RDV50_08005) - 1654206..1654925 (+) 720 WP_137041105.1 SDR family oxidoreductase -
  RDV50_RS08010 (RDV50_08010) thiL 1655113..1656069 (+) 957 WP_137041104.1 thiamine-phosphate kinase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=874397 RDV50_RS07990 WP_036472233.1 1651234..1651521(+) (comE) [Neisseria subflava strain LMG 5313]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=874397 RDV50_RS07990 WP_036472233.1 1651234..1651521(+) (comE) [Neisseria subflava strain LMG 5313]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCGGCGTTCTCTTTGGCTGCCGTGAACATCAATACCGCGTC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4