Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA2   Type   Machinery gene
Locus tag   RDV50_RS06390 Genome accession   NZ_CP133462
Coordinates   1309676..1310371 (+) Length   231 a.a.
NCBI ID   WP_137041287.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304676..1315371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS06370 (RDV50_06370) - 1305581..1306360 (+) 780 WP_137041289.1 exodeoxyribonuclease III -
  RDV50_RS06375 (RDV50_06375) - 1306347..1306691 (+) 345 WP_070748538.1 hypothetical protein -
  RDV50_RS06380 (RDV50_06380) - 1306702..1307235 (+) 534 WP_137041288.1 alpha/beta hydrolase -
  RDV50_RS06385 (RDV50_06385) - 1307395..1309505 (+) 2111 Protein_1243 TonB-dependent receptor -
  RDV50_RS06390 (RDV50_06390) dsbA2 1309676..1310371 (+) 696 WP_137041287.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  RDV50_RS06395 (RDV50_06395) ffh 1310537..1311907 (-) 1371 WP_003684000.1 signal recognition particle protein -
  RDV50_RS06400 (RDV50_06400) - 1312090..1312902 (+) 813 WP_070461213.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25338.79 Da        Isoelectric Point: 5.3625

>NTDB_id=874391 RDV50_RS06390 WP_137041287.1 1309676..1310371(+) (dsbA2) [Neisseria subflava strain LMG 5313]
MRLKTLALTSLTLLALAACGKQAETSVPADSAQSSASAPAAPAPLTEGVNYTVLSTPIPQQQAGKVEVLEFFGYFCPHCA
HLEPVLSEHTKTFKDDTYLRREHVIWGDEMKPLARLAAAVEIAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
DGKKVLAAFEAPESQARAAQMEELTNKFQISGTPTVIVGSKYQVEFKDWQSGMTTIDQLVDKVREEQKKPQ

Nucleotide


Download         Length: 696 bp        

>NTDB_id=874391 RDV50_RS06390 WP_137041287.1 1309676..1310371(+) (dsbA2) [Neisseria subflava strain LMG 5313]
ATGAGACTGAAAACCTTAGCTTTGACTTCATTGACCCTGTTGGCATTGGCCGCTTGCGGCAAACAGGCTGAAACCAGCGT
TCCGGCAGACAGCGCCCAAAGCAGCGCATCTGCTCCGGCAGCGCCAGCTCCATTGACCGAAGGCGTGAACTACACTGTAT
TGTCTACGCCTATTCCACAACAACAGGCCGGCAAAGTCGAAGTATTGGAATTTTTCGGCTACTTCTGCCCGCATTGCGCC
CATTTGGAGCCGGTTTTGAGCGAACACACCAAAACGTTCAAAGACGATACCTACCTGCGTCGCGAGCATGTGATTTGGGG
TGACGAAATGAAACCTTTGGCTCGTTTGGCCGCCGCAGTGGAAATAGCCGGCGAATCAGATAAAGCGAACAGCCATATTT
TCGATGCGATGGTTAATCAAAAAATCAATCTAGCCGATACCGATACCCTGAAAAAATGGTTGTCCGAGCAAACTGCATTT
GACGGCAAAAAAGTATTGGCTGCATTTGAAGCGCCCGAAAGTCAAGCGCGTGCGGCTCAAATGGAAGAGTTGACCAATAA
ATTCCAAATCAGCGGCACACCGACCGTTATCGTCGGCAGCAAATACCAAGTCGAATTTAAAGACTGGCAGTCCGGCATGA
CCACGATTGACCAGTTGGTGGACAAAGTACGCGAAGAGCAGAAAAAGCCGCAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(64-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA2 Neisseria meningitidis MC58

95.305

92.208

0.879
  dsbA1 Neisseria meningitidis MC58

69.957

100

0.706