Detailed information NTG0874252

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: RDU00_RS19005
• Genome accession: NZ_CP133449
• Coordinates: 3601528..3602673 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain KK195
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3596528..3607673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDU00_RS18980 (RDU00_18960)	albF	3596544..3597824 (+)	1281	WP_003242974.1	M16 family metallopeptidase	-
RDU00_RS18985 (RDU00_18965)	albG	3597821..3598522 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
RDU00_RS18990 (RDU00_18970)	ywhL	3598528..3599904 (-)	1377	WP_003244415.1	YncE family protein	-
RDU00_RS18995 (RDU00_18975)	ywhK	3599943..3601298 (-)	1356	WP_003227552.1	YncE family protein	-
RDU00_RS19000 (RDU00_18980)	-	3601295..3601525 (-)	231	WP_009968328.1	hypothetical protein	-
RDU00_RS19005 (RDU00_18985)	rapF	3601528..3602673 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
RDU00_RS19010 (RDU00_18990)	phrF	3602657..3602776 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
RDU00_RS19015 (RDU00_18995)	ywhH	3602875..3603348 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
RDU00_RS19020 (RDU00_19000)	speB	3603380..3604252 (-)	873	WP_003227545.1	agmatinase	-
RDU00_RS19025 (RDU00_19005)	speE	3604313..3605143 (-)	831	WP_003227543.1	spermidine synthase	-
RDU00_RS19030 (RDU00_19010)	pbpG	3605345..3607420 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=874252 RDU00_RS19005 WP_003227549.1 3601528..3602673(+) (rapF) [Bacillus subtilis strain KK195]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=874252 RDU00_RS19005 WP_003227549.1 3601528..3602673(+) (rapF) [Bacillus subtilis strain KK195]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572