Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   RDU00_RS17950 Genome accession   NZ_CP133449
Coordinates   3400905..3402062 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain KK195     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3395905..3407062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS17920 (RDU00_17910) yvyF 3396158..3396577 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  RDU00_RS17925 (RDU00_17915) comFC 3396651..3397373 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  RDU00_RS17930 (RDU00_17920) comFB 3397337..3397633 (-) 297 WP_003227989.1 late competence protein ComFB -
  RDU00_RS17935 (RDU00_17925) comFA 3397693..3399084 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  RDU00_RS17940 (RDU00_17930) fakBA 3399190..3400035 (-) 846 WP_003244125.1 DegV family protein -
  RDU00_RS17945 (RDU00_17935) degU 3400133..3400822 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RDU00_RS17950 (RDU00_17940) degS 3400905..3402062 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  RDU00_RS17955 (RDU00_17945) yvyE 3402279..3402932 (+) 654 WP_003227979.1 YigZ family protein -
  RDU00_RS17960 (RDU00_17950) tagV 3402932..3404107 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  RDU00_RS17965 (RDU00_17955) tagO 3404180..3405256 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  RDU00_RS17970 (RDU00_17960) tuaH 3405401..3406594 (-) 1194 WP_003243252.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=874248 RDU00_RS17950 WP_003227983.1 3400905..3402062(-) (degS) [Bacillus subtilis strain KK195]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=874248 RDU00_RS17950 WP_003227983.1 3400905..3402062(-) (degS) [Bacillus subtilis strain KK195]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTCCGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1