Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RDU00_RS17945 Genome accession   NZ_CP133449
Coordinates   3400133..3400822 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain KK195     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3395133..3405822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS17910 (RDU00_17900) flgN 3395313..3395795 (-) 483 WP_003227999.1 flagellar protein FlgN -
  RDU00_RS17915 (RDU00_17905) flgM 3395811..3396077 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  RDU00_RS17920 (RDU00_17910) yvyF 3396158..3396577 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  RDU00_RS17925 (RDU00_17915) comFC 3396651..3397373 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  RDU00_RS17930 (RDU00_17920) comFB 3397337..3397633 (-) 297 WP_003227989.1 late competence protein ComFB -
  RDU00_RS17935 (RDU00_17925) comFA 3397693..3399084 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  RDU00_RS17940 (RDU00_17930) fakBA 3399190..3400035 (-) 846 WP_003244125.1 DegV family protein -
  RDU00_RS17945 (RDU00_17935) degU 3400133..3400822 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RDU00_RS17950 (RDU00_17940) degS 3400905..3402062 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  RDU00_RS17955 (RDU00_17945) yvyE 3402279..3402932 (+) 654 WP_003227979.1 YigZ family protein -
  RDU00_RS17960 (RDU00_17950) tagV 3402932..3404107 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  RDU00_RS17965 (RDU00_17955) tagO 3404180..3405256 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=874247 RDU00_RS17945 WP_003219701.1 3400133..3400822(-) (degU) [Bacillus subtilis strain KK195]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=874247 RDU00_RS17945 WP_003219701.1 3400133..3400822(-) (degU) [Bacillus subtilis strain KK195]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1