Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   RDU00_RS12500 Genome accession   NZ_CP133449
Coordinates   2359623..2360693 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain KK195     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2354623..2365693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS12455 (RDU00_12455) tapA 2355102..2355863 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  RDU00_RS12460 (RDU00_12460) yqzG 2356135..2356461 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  RDU00_RS12465 (RDU00_12465) spoIITA 2356503..2356682 (-) 180 WP_003230176.1 YqzE family protein -
  RDU00_RS12470 (RDU00_12470) comGG 2356753..2357127 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  RDU00_RS12475 (RDU00_12475) comGF 2357128..2357511 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  RDU00_RS12480 (RDU00_12480) comGE 2357537..2357884 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  RDU00_RS12485 (RDU00_12485) comGD 2357868..2358299 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  RDU00_RS12490 (RDU00_12490) comGC 2358289..2358585 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  RDU00_RS12495 (RDU00_12495) comGB 2358599..2359636 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  RDU00_RS12500 (RDU00_12500) comGA 2359623..2360693 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  RDU00_RS12505 (RDU00_12505) corA 2361105..2362058 (-) 954 WP_004399136.1 magnesium transporter CorA -
  RDU00_RS12510 (RDU00_12510) yqhB 2362201..2363529 (+) 1329 WP_009967730.1 hemolysin family protein -
  RDU00_RS12515 (RDU00_12515) rsbRD 2363582..2364418 (-) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -
  RDU00_RS12525 (RDU00_12525) mgsR 2364642..2365022 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  RDU00_RS12530 (RDU00_12530) yqgY 2365254..2365499 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=874224 RDU00_RS12500 WP_004399124.1 2359623..2360693(-) (comGA) [Bacillus subtilis strain KK195]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=874224 RDU00_RS12500 WP_004399124.1 2359623..2360693(-) (comGA) [Bacillus subtilis strain KK195]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1