Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RDU00_RS02110 Genome accession   NZ_CP133449
Coordinates   416288..417238 (+) Length   316 a.a.
NCBI ID   WP_003234491.1    Uniprot ID   A0AAE2SHG3
Organism   Bacillus subtilis strain KK195     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411288..422238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS02085 (RDU00_02095) rapC 412747..413895 (+) 1149 WP_003246686.1 response regulator aspartate phosphatase RapC Regulator
  RDU00_RS02090 (RDU00_02100) phrC 413879..414001 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  RDU00_RS02095 (RDU00_02105) yczM 414101..414190 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  RDU00_RS02100 (RDU00_02110) yczN 414272..414385 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  RDU00_RS02105 (RDU00_02115) thrD 414539..415903 (-) 1365 WP_009966541.1 aspartate kinase -
  RDU00_RS02110 (RDU00_02120) ceuB 416288..417238 (+) 951 WP_003234491.1 petrobactin ABC transporter permease YclN Machinery gene
  RDU00_RS02115 (RDU00_02125) yclO 417231..418178 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  RDU00_RS02120 (RDU00_02130) yclP 418172..418930 (+) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  RDU00_RS02125 (RDU00_02135) yclQ 418952..419905 (+) 954 WP_003246619.1 petrobactin ABC transporter substrate-binding protein YclQ -
  RDU00_RS02130 (RDU00_02140) cdaE 419952..421370 (-) 1419 WP_003246604.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34899.33 Da        Isoelectric Point: 9.9364

>NTDB_id=874187 RDU00_RS02110 WP_003234491.1 416288..417238(+) (ceuB) [Bacillus subtilis strain KK195]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTVLLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=874187 RDU00_RS02110 WP_003234491.1 416288..417238(+) (ceuB) [Bacillus subtilis strain KK195]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TTGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGTGCTGTTGGGAGCGGTTTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522